Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 216 a.a., Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  150 bits (378), Expect = 3e-41
 Identities = 75/204 (36%), Positives = 128/204 (62%), Gaps = 3/204 (1%)

Query: 3   KKDKRWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQ 62
           K  + W+ +  ND Y  +A++  YRSRA+YKL ++ EK  LI+    V+DLG APGGW Q
Sbjct: 5   KTSQNWLREHFNDPYVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMTVIDLGAAPGGWSQ 64

Query: 63  AARDIVGEDGFIVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLPE-KPDVIICDA 121
               ++G  G ++  D+  +  +P  ++  I+GD T++ +L +  + +   + D++I D 
Sbjct: 65  VTSRLIGGQGRLIASDILEMDSIP--DVTFIQGDFTEDAVLAKILEAVGNTQVDLVISDM 122

Query: 122 SPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKA 181
           +PN+SG+  VD  R++ L+ +AL  A ++L+ GG+F++KVFQG+ F++Y + + + FDK 
Sbjct: 123 APNMSGLSAVDMPRAMFLSELALDLAGRVLRPGGDFLIKVFQGEGFDEYHKGIRKLFDKV 182

Query: 182 FTTKPRASRDESAEVYVIGKRFNG 205
              KP +SRD S E Y++ + F G
Sbjct: 183 QMRKPLSSRDRSREQYLLARGFRG 206