Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 209 a.a., ribosomal RNA large subunit methyltransferase E from Vibrio cholerae E7946 ATCC 55056

 Score =  144 bits (362), Expect = 2e-39
 Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 9/203 (4%)

Query: 7   RWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARD 66
           RW+ +  +D Y N AK++ YRSRA +K+ ++  K  L+K    VVDLG APGGW Q A  
Sbjct: 12  RWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQFAAK 71

Query: 67  IVGEDGFIVGIDLQTVKPLPHDNIIAI---KGDMTKEEILKQAKD-LLPEKPDVIICDAS 122
           +VGE G ++  DL     LP ++I  +   +GD  +E +L    D + P+  DV++ D +
Sbjct: 72  VVGEGGRVIACDL-----LPMESIAGVSFLQGDFREEAVLNALLDRIQPDMVDVVMSDMA 126

Query: 123 PNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182
           PN++G   VD  R++ L  +AL    ++L   G+FVVKVFQG+ F+ YV+ V + F    
Sbjct: 127 PNMAGNLSVDQPRAMYLVELALDMCRQVLAPNGSFVVKVFQGEGFDDYVKAVRDLFKVVK 186

Query: 183 TTKPRASRDESAEVYVIGKRFNG 205
             KP +SR  S EV+++   + G
Sbjct: 187 IRKPDSSRSRSREVFIVATGYKG 209