Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 209 a.a., 23S rRNA methyltransferase J (RefSeq) from Shewanella amazonensis SB2B

 Score =  145 bits (365), Expect = 8e-40
 Identities = 81/197 (41%), Positives = 120/197 (60%), Gaps = 9/197 (4%)

Query: 7   RWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARD 66
           RW+ +  +DHY  LA++R  RSRA +KL +L EK +LIK    VVDLG APGGW Q A  
Sbjct: 12  RWMQEHFDDHYVKLAQKRGLRSRAAFKLEELQEKDHLIKPGMTVVDLGAAPGGWSQVAVK 71

Query: 67  IVGEDGFIVGIDLQTVKPLPHDNIIAI---KGDMTKEEILKQAKDLL-PEKPDVIICDAS 122
           +VG+ G ++  D+     LP D I+ +   +GD  ++ +L    + +  EK DV++ D +
Sbjct: 72  LVGDRGKVIACDI-----LPMDPIVGVDFLQGDFREDAVLNALLERVGDEKVDVVLSDMA 126

Query: 123 PNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182
           PN+SG   VD  R++ L  +AL    ++L   G+F VKVFQG+ F++Y++ V E F    
Sbjct: 127 PNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVREAFKVVK 186

Query: 183 TTKPRASRDESAEVYVI 199
           T KP +SR  S EVY++
Sbjct: 187 TRKPDSSRARSREVYLV 203