Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 251 a.a., ribosomal RNA large subunit methyltransferase J from Phaeobacter inhibens DSM 17395

 Score =  122 bits (307), Expect = 5e-33
 Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 10/211 (4%)

Query: 7   RWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAA-- 64
           RW+ ++ ND Y   A+   YR RA YK+ ++++KF  +     VVDLGCAPGGW Q A  
Sbjct: 39  RWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKFRFLINGARVVDLGCAPGGWAQVAVK 98

Query: 65  -RDIVGED-----GFIVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLPEKPDVII 118
             + +GE      G I+G+DLQ V+PL       +  D   +    + K+ L  K DV++
Sbjct: 99  RINALGEKPGKAVGRIIGVDLQEVEPLAGAEFHQL--DFMDDGADDKVKEWLGGKADVVM 156

Query: 119 CDASPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYF 178
            D +   SG    DH+R + L   A   A  +L+ GG FV KV  G    +  +L+ + F
Sbjct: 157 SDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEDGGTFVAKVLAGGAEGELQKLLKQKF 216

Query: 179 DKAFTTKPRASRDESAEVYVIGKRFNGKKFD 209
            K +  KP +SR +S+E +V+   F G   D
Sbjct: 217 TKVYHVKPPSSRSDSSEKFVVATGFRGDASD 247