Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 209 a.a., 23S rRNA methyltransferase J (RefSeq) from Shewanella loihica PV-4

 Score =  142 bits (357), Expect = 7e-39
 Identities = 76/197 (38%), Positives = 119/197 (60%), Gaps = 9/197 (4%)

Query: 7   RWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARD 66
           RW+ +  +DHY  L+++R  RSRA +K+ ++ +K  LI+    VVDLG APGGW Q A  
Sbjct: 12  RWMQEHFDDHYVKLSQKRGLRSRAAFKIEEIQQKDKLIRPGMTVVDLGAAPGGWSQIAVK 71

Query: 67  IVGEDGFIVGIDLQTVKPLPHDNIIAI---KGDMTKEEILKQAKDLLPE-KPDVIICDAS 122
           + GE G ++  D+     LP D I+ +   +GD  +E++L    + + + K DV++ D +
Sbjct: 72  LAGETGKVIACDI-----LPMDPIVGVDFLQGDFREEKVLNALLERVGDAKVDVVLSDMA 126

Query: 123 PNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182
           PN+SG   VD  R++ L  +AL    ++L   G+F VKVFQG+ F++Y++ V E F    
Sbjct: 127 PNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEYMKAVREAFTTVK 186

Query: 183 TTKPRASRDESAEVYVI 199
           T KP +SR  S EVY++
Sbjct: 187 TRKPDSSRPRSREVYLV 203