Pairwise Alignments

Query, 232 a.a., endonuclease III from Methanococcus maripaludis S2

Subject, 226 a.a., DNA repair protein, HhH-GPD family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  133 bits (335), Expect = 2e-36
 Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 44/242 (18%)

Query: 2   DNKETFQKIYDHLFNLYGPQGWWPLLEVNGCNPTKTGSINGYHPNNYEYPKTKNQCFEVC 61
           D +     +Y  +    GP GWWP                G  P             EV 
Sbjct: 4   DRQRLLLDMYAAMSARLGPSGWWP----------------GETP------------LEVA 35

Query: 62  IGAILTQNTSWPSVEKSLKNLRKLIEITPENIINLDIEQLKEA-IKPSGYYNQKSVRLKG 120
           IGA+LTQNT+W +VEK++ NLR    ++    +     QL EA I+PSGY+  K+ RL+ 
Sbjct: 36  IGAVLTQNTAWGNVEKAIANLRDAGLLSDVGALLAASPQLVEACIRPSGYFRMKTTRLRD 95

Query: 121 FSEFFIKL--------------NHVPTREELLKLNGVGPETADSMLLYAFKVPSFVVDAY 166
              FF +               +    RE LL + G+GPETADS+LLYAF  PSFVVDAY
Sbjct: 96  LMLFFDEACAGDLDALSASAGEDGDALRERLLSVKGIGPETADSILLYAFGHPSFVVDAY 155

Query: 167 TKRILINLNLIDGSEKYDKIKELFEENVEKNLEIYQEYHALIVEHAKNY-YRKKENYITC 225
           T+RIL    L+     YD++++ F + ++ +  +Y E+HALIV  AK + ++ + +   C
Sbjct: 156 TRRILSRHGLLPEDVHYDEMRDFFMDVLDPDPVLYNEFHALIVRVAKGWCHKSRPDCAAC 215

Query: 226 PL 227
           PL
Sbjct: 216 PL 217