Pairwise Alignments

Query, 528 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 446 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score = 77.8 bits (190), Expect = 8e-19
 Identities = 92/367 (25%), Positives = 163/367 (44%), Gaps = 55/367 (14%)

Query: 186 ITDSNKNAGSQTFDIGKDMVYASIVYPNQVSAFKLTKDLKEGYEIPFLGKKYRIVQIDED 245
           I D   N   +    G+ + Y +  Y  ++ +        EG E+ F+GK YR+++ +  
Sbjct: 83  INDGKGNLLVEFTKSGETVTYKNFEYEEEIESDD------EGDEVTFMGKTYRVLEYES- 135

Query: 246 DGIIYLGTASYDGTLEQGNYISSGEYQVVIGEILESGDEYSVEISILRNGNIIKEHTEIL 305
            G I LG      T+E         Y+    +++ S  +  + +S+ + GN   ++ ++ 
Sbjct: 136 -GKIVLGN-----TIEDFETSDEFNYEGYTIKVVASNSDGEIMVSVYK-GNDRVDNLKMY 188

Query: 306 RSDKSFSVIAGDLGVTVHDVWTNAAADTGYADITICRSLTELKLGEEYVNNWEVRA-VTN 364
             D    +I+G      +D +  +  DT Y    +  SL EL+ GE + +N E    +  
Sbjct: 189 PDDSC--MISGSSLSLYYDEYLTSG-DTPYFFFELSDSL-ELEDGESFEDNGEFDVEIDG 244

Query: 365 TGGTIDF-----------LKTY---------EDNTVGIALVYSGSDIEEINDGDRIKIAD 404
              T+D+           L  Y         ED TV   +  + S   ++++G +    +
Sbjct: 245 KKITLDYDSPKSLSKNFELLNYNVELTDVSSEDLTVFFTVTQTESYEYDMDEGTKYFGNN 304

Query: 405 Y--VNLVFDDEDDLDKMVAEFKAERTVTTGSTGGTVISKSGEVPEIIMDSEIELDEADKN 462
              V L  D+E+D D  +  +K  +          ++   G V  +  D   EL  A  +
Sbjct: 305 IFAVKLDNDEENDWDDELYLYKNNKKYDK------IVDYQGSVQLVDQD---ELLSASSD 355

Query: 463 LILIGGPVANKLTKELQNEGKIDIGNESPATA-SLIEGAANGNN----VLVIAGGDRYST 517
           LILIGGPV+NK+T+ +QN   +++ N+ P     +I+   N NN    +LV+AG DR  T
Sbjct: 356 LILIGGPVSNKVTESIQNSLSVEVTNDYPGEGKGVIQTITNPNNGNSKILVLAGSDRDGT 415

Query: 518 ESAVLSL 524
           ++ VL+L
Sbjct: 416 KACVLAL 422