Pairwise Alignments

Query, 528 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 538 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score =  301 bits (771), Expect = 4e-86
 Identities = 201/560 (35%), Positives = 309/560 (55%), Gaps = 54/560 (9%)

Query: 1   MKSILKKIGCILVGST-VLSASITAAYALEKYGNINDFIDDDLIKNGNPDVYIVVGENAA 59
           M   +KKIG I VG   V SA  T A+A EK G+++ F  D ++ +GN +V IVVG NAA
Sbjct: 1   MAMSMKKIGAIAVGGAMVASALATGAFAAEKVGDVDAFAAD-VVADGNANVDIVVGSNAA 59

Query: 60  ALDVTSANKISAKIGTLTYSETIIED-ESTVEYQIIGESESIDLLDGTDKLDSAGTEKSW 118
           ALDV SA  I+AKIG+L ++E  +ED  +TV  +   ES+   + D  D+ +  GT  + 
Sbjct: 60  ALDVVSAANIAAKIGSLMFTEGTVEDGAATVSVKAEAESDDEQVYDADDEAN-VGTFPA- 117

Query: 119 ILVTSADDDYADHFDDEEGNSFSYSGFSEADQTKSLGHLGYLLEVGDIDPENHF-ESDDD 177
             VTSAD DY + F+D   +SF  + +       SLG L  L+E+ DIDP   + + +D+
Sbjct: 118 TFVTSADKDYNELFND---SSFVITNYV------SLGKLDTLVEIDDIDPSEWYSDEEDN 168

Query: 178 ATEIVFVRITDSNKNAGSQTFDIG-KDMVYASIVYPNQVSAFKLTKDLKEGYEIPFLGKK 236
           A E+V+  ++ ++K      FDI   D+ Y S V  + +    +   L+ G  IPFLG++
Sbjct: 169 AAELVYATVSSTSKVG---EFDINDSDVAYISAVTNDTIEDGFVK--LQPGMRIPFLGEE 223

Query: 237 YRIVQIDEDDGIIYLGTASYDGTLEQGNYISSGE-YQVVIGEILE---SGDEYSVEISIL 292
           Y +V++D DD  + +G   +DG +++G     G  Y V +  +L    + +E  V + IL
Sbjct: 224 YVLVKVDSDDDFVVIGKEVFDGVIKEGESYDLGNGYTVKVDSVLSPLGTTEEPKVNVKIL 283

Query: 293 RNGNIIKEHTEILRSDKSFSVIAGDLGVTVHDVWTNAAADTGYADITICRSLTELKLGEE 352
           ++G  + E  +  +      ++ GD+GV V+  W N  +D GYA++ I  ++ +  LGEE
Sbjct: 284 KDGKTVAEKFDTTQ----IKMVYGDIGVVVNSAWENVGSDYGYAELVIVDNVVKADLGEE 339

Query: 353 YVNNWEVRAVTNTGGTIDFLKTYEDNTV-------GIALVYSGSDIEEINDGDRIKIADY 405
           ++ +WE+    +     D    +ED+         G+AL Y G D E +  GD   IADY
Sbjct: 340 FLPDWELYLFNSDATITDIDDIFEDDASKSGLVVSGLALKYVGDDEEGLEGGDDFDIADY 399

Query: 406 VNLVFDDEDDLDKMVAEFKAERTVTTGSTGGTVISKSGEV-----------------PEI 448
           V    +D+DD   ++ +    + V+  + G +V   + E+                 P  
Sbjct: 400 VTFDLEDDDDDTNVLFKMDQAKEVSL-AIGQSVNVLNAEIKLAEIDAEAKEAVVMTAPIA 458

Query: 449 IMDSEIELDEADKNLILIGGPVANKLTKELQNEGKIDIGNESPATASLIEGAANGNNVLV 508
           ++DSE  LD ADK LIL+GGPV N LT EL + G + I NESPAT ++  GAANGN+VLV
Sbjct: 459 VLDSEASLDAADKGLILVGGPVVNALTAELADAGLVAIDNESPATLAVAAGAANGNDVLV 518

Query: 509 IAGGDRYSTESAVLSLINLI 528
           +AGGDR +TE A  +LI+++
Sbjct: 519 VAGGDRAATEEAAEALIDML 538