Pairwise Alignments

Query, 528 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 548 a.a., S-layer protein from Methanococcus maripaludis JJ

 Score =  279 bits (714), Expect = 2e-79
 Identities = 184/556 (33%), Positives = 296/556 (53%), Gaps = 44/556 (7%)

Query: 5   LKKIGCILVGSTVLSASITA-AYALEKYGNINDFIDDDLIKNGNPDVYIVVGENAAALDV 63
           +KKI  I +G  +L  ++++ A+A+E+ G+++ F+ D ++   N ++ I+VG N+ A DV
Sbjct: 5   IKKIVSIGLGGLMLGTTLSSSAFAVEQVGDVDSFVSD-IVSGNNSNIDIIVGSNSVASDV 63

Query: 64  TSANKISAKIGTLTYSETIIEDES-TVEYQIIGESESIDLL--DGTDKLDSAGTEKSWIL 120
            SA  I+AKIG+L++ E   E  S T+       S+  DLL  D  D   +  +  + + 
Sbjct: 64  VSAANIAAKIGSLSFLEQHDESASATLSVSASASSDDFDLLNDDAADDSINFTSNGNGLF 123

Query: 121 VTSADDDYADHFDDEEGNSFSYSGFSEADQTKSLGHLGYLLEVGDIDPENHFESDDDATE 180
           +  ADDDYAD   D   +  +  G    +  KSLG L  L  V DIDP + F SDDDA E
Sbjct: 124 IACADDDYADVLADITYDDST--GLDADNGAKSLGKLSTLSSVDDIDPSDWFNSDDDAYE 181

Query: 181 IVFVRITDSNKNAGSQTFDIGKD-MVYASIVYPNQVSAFKLTKDLKEGYEIPFLGKKYRI 239
            +F ++     N  S  ++I ++ + YA I + +  S+F     L  G  IPF+G+++ I
Sbjct: 182 FLFAKL-----NNDSGEWNINEEGLAYAVISFKDDASSFDDITTLCPGKRIPFMGEEWVI 236

Query: 240 VQIDEDDGIIYLGTASYDGTLEQG-NYISSGEYQVVIGEILESGD---EYSVEISILRNG 295
           + +  D     LG   YDG +++G +Y     Y+V I  I++S D   E  V   +L++G
Sbjct: 237 IGMSADKDSFALGKEVYDGVIKEGESYTLGNGYEVKILNIIQSLDDENECKVNAQLLKDG 296

Query: 296 NIIKEHTEILRSDKSFSVIAGDLGVTVHDVWTNAAADTGYADITICRSLTELKLGEEYVN 355
            +I   TE+  + +  ++ +  +GV ++  W N  +D GYA++ I  ++  L LGEEY+ 
Sbjct: 297 KVI---TEVFDNPR-LNMCSNGIGVRINSAWQNIGSDYGYAELVIVNNMKCLSLGEEYIP 352

Query: 356 NWEVRAVTNTGGTIDF---LKTYE--DNTVGIALVYSGSDIEEINDGDRIKIADYVNLVF 410
           +WE   +     T+++    K++E     VG+AL Y G D+E+I  GD I IA+Y     
Sbjct: 353 DWETYGILKGNNTLEYTDDFKSFEYGQKKVGLALKYVGDDLEDIGSGDEITIANYGTFTL 412

Query: 411 DDEDDLDKMVAEFKAERT------------------VTTGSTGGTVISKSGEVPEIIMDS 452
           DDED+ DK+   F+                      V      G   S +   P + +D+
Sbjct: 413 DDEDEDDKLSVFFEMNEEKEVSIVKNQKVNVLNAEIVADAIFAGDEESLTVNAPVVKLDT 472

Query: 453 EIELDEADKNLILIGGPVANKLTKELQNEGKIDIGNESPATASLIEGAANGNNVLVIAGG 512
           E  ++ ++  LIL+GGP  N +TKEL +   I I ++S AT S++   ANGN+VLV+AGG
Sbjct: 473 ETSMESSENPLILVGGPFVNSITKELADTRLIAINDDSLATLSVVSETANGNDVLVVAGG 532

Query: 513 DRYSTESAVLSLINLI 528
           DR +T  A  +LI +I
Sbjct: 533 DRIATTEAANALIAMI 548