Pairwise Alignments

Query, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

Subject, 563 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) from Pseudomonas stutzeri RCH2

 Score =  229 bits (584), Expect = 2e-64
 Identities = 152/505 (30%), Positives = 256/505 (50%), Gaps = 26/505 (5%)

Query: 55  IKKGDHIGIWARNVPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDS 114
           ++ GD I +   N+  +   +F   + G+++V  N  Y + E+ +    +  KAL  +  
Sbjct: 72  LQPGDRIAVQLPNLIQYPIVVFGAMRAGLIVVNTNPLYTAREMEHQFNDAGAKALVCL-- 129

Query: 115 FRDVNYLEILYELVPELKTSQRGKLNSEE---FPYLKNVIYVGQEKHRGM----YNTTEL 167
               N   +  E++P  KT  +  + +E     P LK ++     KH       Y+  + 
Sbjct: 130 ---ANMAHLAEEVLP--KTGIKHVVITEVADMLPPLKRMLVNAVVKHVKKMVPAYSLPKA 184

Query: 168 MLLGNYVSDEKLIEAKKGLD-SDDVINMQYTSGTTGFPKGVMLTHKNILNNGYY----IG 222
           + L + ++  +    ++ L  SDDV  +QYT GTTG  KG MLTH+NI+ N       +G
Sbjct: 185 VKLNDALALGRGKPVREALPKSDDVAVLQYTGGTTGVAKGAMLTHRNIVANMLQCKALMG 244

Query: 223 EKQKFTEEERLCLPVPLFHCFGIVLGVLALLTHGGTLVMLEIFDPL-LVLAAIQKEKCTA 281
                   E L  P+PL+H +      +A++  G   +++     L  ++  + K + + 
Sbjct: 245 SNLN-DGSEVLIAPLPLYHIYAFTFHCMAMMLSGNHNILISNPRDLPAMIKDLGKYRFSG 303

Query: 282 VYGVPTMFIAEFSHPMFEMFDLSSLRTGIMAGSTCPIEAMKKVMSDMYMREITISYGLTE 341
             G+ T+F+A  +   F   D S+L+  +  G    +   ++    +    I   YGLTE
Sbjct: 304 FVGLNTLFVALCNSEDFRKLDFSALKVTLSGGMALQLATAER-WKQVTGCPICEGYGLTE 362

Query: 342 ASPVFTMTSVDDPFEKRVESVGKAMPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGY 401
            SPV ++  ++     ++ S+G  +P  + K+I+ + G+ LA G +GE+C +G  VMKGY
Sbjct: 363 TSPVASVNPIE---HIQLGSIGIPVPSTQFKVINDD-GQDLAQGEIGELCIKGPQVMKGY 418

Query: 402 YKMPEKTAEVIEKDGWLHSGDLAVEDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTM 461
           ++ PE T EVI+  GW  +GD+ V  EDGY +IV R KDMI+  G N+YP E+E+ L ++
Sbjct: 419 WQRPEATDEVIDAQGWFKTGDIGVIQEDGYIRIVDRKKDMILVSGFNVYPNELEDVLASL 478

Query: 462 PGINDAQVVGIPDEKYGEIVGAFVIPKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEF 521
           PG+  +  +G+PDEK GE +  FV+ K G  + +E V     + +  YK PK V   +  
Sbjct: 479 PGVLQSAAIGVPDEKSGEAIKLFVVVKPGESLTKEQVMQHMHDNLTGYKRPKAVEFRDSL 538

Query: 522 PMTASGKIQKFKLTELAVELLKKKK 546
           P T  GKI + +L +  +  L  KK
Sbjct: 539 PTTNVGKILRRELRDEELRKLGHKK 563