Pairwise Alignments

Query, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

Subject, 578 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  542 bits (1396), Expect = e-158
 Identities = 271/537 (50%), Positives = 363/537 (67%), Gaps = 2/537 (0%)

Query: 7   TIGEFFEKQAQKDPDREFLVYPDRNLRFTYKEFDERTDLLAKGLLEIGIKKGDHIGIWAR 66
           TIG++ +  A   P++  +V   +++R+ Y+++  R D LA GLL++GI  GD IGIW+ 
Sbjct: 37  TIGQYLDDIANTYPEQLAVVVNHQDIRWNYRQYLARIDALAAGLLKLGIGPGDRIGIWSP 96

Query: 67  NVPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDVNYLEILYE 126
           N  +W    FATAKIG ++V +N AY+  EL Y +     +A+   D F+  NYL++LY 
Sbjct: 97  NNIEWCLTQFATAKIGAIMVCINPAYRPEELQYALTNVGCRAVICADKFKSSNYLQMLYT 156

Query: 127 LVPELKTSQRGKLNSEEFPYLKNVIYVGQEKHRGMYNTTELMLLGNYVSDEKLIEAKKGL 186
           L PELK    G+L ++  P L+ VI +G EK  GM N  +L++  +      L     GL
Sbjct: 157 LAPELKECAAGQLQAKALPELQFVIRMGAEKSPGMLNFDDLLVEVSADDKAMLERIANGL 216

Query: 187 DSDDVINMQYTSGTTGFPKGVMLTHKNILNNGYYIGEKQKFTEEERLCLPVPLFHCFGIV 246
              D IN+Q+TSGTTG PKG  L+H NILNNGY + E  KFT +++LC+PVPL+HCFG+V
Sbjct: 217 SPYDAINIQFTSGTTGSPKGATLSHHNILNNGYLVAEAMKFTCDDKLCIPVPLYHCFGMV 276

Query: 247 LGVLALLTHGGTLVML-EIFDPLLVLAAIQKEKCTAVYGVPTMFIAEFSHPMFEMFDLSS 305
           LG L  L  G   V   + FDPL  L  +++E+CTA++GVPTMFIAE  HP F  FDLSS
Sbjct: 277 LGNLVCLAKGAAAVFPGDSFDPLTTLEVVERERCTALHGVPTMFIAELEHPEFTRFDLSS 336

Query: 306 LRTGIMAGSTCPIEAMKKVMSDMYMREITISYGLTEASPVFTMTSVDDPFEKRVESVGKA 365
           LRTG+MAG+TCP E M++V   MYM+E+ I YG TE SP+  +T +D P EKRV +VG+A
Sbjct: 337 LRTGVMAGATCPEEVMRRVQQLMYMQEVLIGYGQTECSPLNHITEIDSPVEKRVLTVGRA 396

Query: 366 MPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGYYKMPEKTAEVIEKDGWLHSGDLAV 425
           +PH EVKI+D E GE L     GE+C RGY +M+ Y+  PEKTA  I+++GWLHSGD+  
Sbjct: 397 LPHTEVKIVD-EFGEVLPINQPGEVCSRGYCIMQCYWNDPEKTAATIDREGWLHSGDIGQ 455

Query: 426 EDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQVVGIPDEKYGEIVGAFV 485
            DE GY +IVGRIKDMIIRGGENIYPREIEE LYT   + DA V G+  +KYGE V A++
Sbjct: 456 MDEQGYVQIVGRIKDMIIRGGENIYPREIEEKLYTHKDVQDAAVFGVHSDKYGEEVCAWI 515

Query: 486 IPKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEFPMTASGKIQKFKLTELAVELL 542
             + G  IKEED+R F  EK A +KVP+++  V+++PMT +GKIQKFK+ EL  + L
Sbjct: 516 KVRSGATIKEEDIRHFLTEKFAYFKVPRYIKFVDQYPMTVTGKIQKFKMRELMYQEL 572