Pairwise Alignments

Query, 431 a.a., DHH family phosphoesterase from Methanococcus maripaludis S2

Subject, 467 a.a., single-stranded-DNA-specific exonuclease RecJ from Methanococcus maripaludis JJ

 Score =  151 bits (381), Expect = 5e-41
 Identities = 138/460 (30%), Positives = 221/460 (48%), Gaps = 70/460 (15%)

Query: 24  ENCDGLIRIVTHHDPDGLTAGSIMLKTLLRLNKNVQMTILEHLSKESVEELSKENDKMFI 83
           +N D  I + TH D DG+ +  I+   L RLN   +   L  +   +++ +  +ND + I
Sbjct: 16  KNRDKKILVCTHIDTDGINSRIILENVLERLNIEAEFLFLRQIDYGTIDTIPFDND-LII 74

Query: 84  FCDMGSGQINLINHL------QFNAVILDHHPPEVAETEIG-NILQLNPHLFGANGAKEI 136
           F D+GSGQI+LIN        +   +ILDHH   V+  +I  NI+ +NPH  G +G KEI
Sbjct: 75  FADLGSGQIDLINEKLKETSKKPKIIILDHHI--VSNEKIPENIVNVNPHNDGIDGGKEI 132

Query: 137 SASGVCYLIARLFE--YYDLATVAVVGAIGDMQHLP--FIGLNK-YILNEARKYRYLSVI 191
             +GVCYL A++ +  + DLA  AV+GA+GD+Q L    IGLN+  IL +A K   +SV 
Sbjct: 133 CGAGVCYLFAKICDPRFTDLAKYAVLGAVGDVQSLEGNLIGLNRDVILRDAVKAGDISVS 192

Query: 192 KDI-VYNCYNLPISRSIYYSTQPYIRELDGIDKIKEILEELSINPEKKGITVAEKENLL- 249
            D+  Y  +  P+  SI Y T       D  D    I+  ++    K G  +  K+ L  
Sbjct: 193 PDLQFYGKHTRPLFTSIKYFTDV---RTDLTDNDSRIINFINNVNRKHGTDIIPKDYLCD 249

Query: 250 -----------EYFKR-----------------FNKNDDLIVDRYEINHKLNDAFYLSEV 281
                      E+  +                 F ++ +L  + ++ N K  + F  S  
Sbjct: 250 LTFDQKKIMGSEFLHKCSRYIPPAWRIHLPKVIFGESYELTNEEFKSNLKNLEEF--STC 307

Query: 282 LNACGRKEMTSVGIGILLGD-DECIRQGENLYKEYKDELIGEL----KNVKLTSMDNIEY 336
           +N C R +   V + +L GD D+   +   + K++K  L G +     +V++   +N +Y
Sbjct: 308 INGCSRYDEYDVPLEVLKGDRDKNYSKMLKMLKKHKRNLAGSMNFLRNDVEIVQKENFQY 367

Query: 337 FIGEKGK-----TGIISALMVK------DKPVLGFNEQGEIYKVSSRGSKELVEC-GLNL 384
           F  +K        GI++ +          KP+   +E  + YKVS+R  K L     +NL
Sbjct: 368 FKVDKNAIKGNIVGIVAGMSYSLEKVDWKKPIFAVSEMDDGYKVSARCPKLLSFAEDINL 427

Query: 385 SKAM-VVSKEFGGDGGGHNIASGAAIQKNYLNEFLEKVNE 423
           + A+   SK+ GG GGGH  A GA I +  + +F++ + E
Sbjct: 428 ASAINYASKKVGGSGGGHKFACGAYIPE--IGDFVKYLEE 465