Pairwise Alignments

Query, 356 a.a., DUF123 domain-containing protein from Methanococcus maripaludis S2

Subject, 231 a.a., endonuclease III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (289), Expect = 9e-31
 Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 23/239 (9%)

Query: 20  KKDAVVDKISKNSDKNERA------FKILISTVISARTKDETTAKVSKELFKKVKNPKDL 73
           K+  ++ ++ +N+ K +        F++L++  +SA+  D +  K + +LF        +
Sbjct: 5   KRIQILTRLRENNPKPQTELNFSSPFELLVAVTLSAQATDVSVNKATDKLFPVANTAHSI 64

Query: 74  VQIPIDELEKLVHPAGFYKTKAKNLKKLGEILIDKYNSNVPNSIEELVTLPGVGRKTANL 133
             + ++ L++ +   G Y  KA N+ K  EILI+KYN  VP   E L +LPGVGRKTAN+
Sbjct: 65  YALGVEGLKEYIKTIGLYNNKAVNVIKACEILIEKYNGEVPEDREALESLPGVGRKTANV 124

Query: 134 VMTLAFDDYAICVDTHVHRITNRWYYADTESPENTEMDLRKKLPKNYWKKINNLLVVFGQ 193
           V+  AF    I VDTH+ R+ NR  +A  ++    E  + K +P  +   +++  ++ G+
Sbjct: 125 VLNTAFGWPTIAVDTHIFRLANRTKFAPGKNVVEVEERMLKVVPAEFKVDVHHWFILHGR 184

Query: 194 ETC-SPIPKCDKCFSEIKKICPHYNSLKEIEKIYADFNFKKTPKTKIPKDKGTYVLKIK 251
            TC +  P+C  C   I+ +C + ++LK           + TPK K   DK   VLK K
Sbjct: 185 YTCLARKPRCGSCI--IEDLCEYKSTLKR----------RFTPKNKF-TDK---VLKAK 227