Pairwise Alignments

Query, 360 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

Subject, 277 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score = 84.0 bits (206), Expect = 4e-21
 Identities = 65/273 (23%), Positives = 139/273 (50%), Gaps = 26/273 (9%)

Query: 78  NVIESFV---TYQLFGFDLKILTYSLLIIYFTYRISNRSKRYLLLKGSQEGKFAEYRLKA 134
           N++  F+   ++QL G     L   LL ++   +ISN     L+ K     +F ++ +  
Sbjct: 18  NLLTEFLVKYSFQLVG----ALLIFLLGLWVANKISN-----LVAK-----QFEKHEIDI 63

Query: 135 TVFHYSAMIIAFGIVFQMLGLTS--KLGT----LLVAGGITGIILGFASQTVVANFISGI 188
           T+ ++ + ++   ++  M+G+ +  KLG     ++ A G   +  G A Q +++N+ +G+
Sbjct: 64  TLSNFVSNLVRI-LIIVMVGVIALGKLGISITPMVAAIGAASLGAGLALQGMLSNYAAGV 122

Query: 189 FLYFDKPLKIGDSVQIGTNSGIVNDIKMMSTRIRTWDGVLVRIPNEKVFNSEIVNNKKYP 248
            +   +P  +G++++I   SG+V  I +  T +   +G ++ IPN+ +   EI++N  + 
Sbjct: 123 TIIVTRPFVVGNTIEIQGVSGVVKSIHLGLTLLTNEEGEVISIPNKHIVG-EILHNS-FS 180

Query: 249 ARRVDIVVGIAYKEDAQRAMDIISKILENMTYVLVEPEFQIFVNDLGNSSVDISVKAWTP 308
            + V+I   I+Y  DA + + I  ++L+    V  E   QI +N   +  ++I ++ W P
Sbjct: 181 DKLVEIRFNISYASDANQVLAIAQQVLDANEEVNQERAPQIGINGFNSIGLEIGLRYWVP 240

Query: 309 SEKWYDVKMELVKNIKKEFDKEKVEIPFPQRTV 341
           + ++Y  K ++   +     +  +EIP P R +
Sbjct: 241 TNRYYQNKYQVNLELINALRQAGIEIPCPVREI 273