Pairwise Alignments

Query, 360 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

Subject, 297 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (249), Expect = 5e-26
 Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 18/283 (6%)

Query: 80  IESFVTYQLFGFDLKILTYS---------LLIIYFTYRISNRSKRYLLLKGSQEGKFAEY 130
           I+  +++ LF +    +T S         LL  +   RI    +R LL +     K A  
Sbjct: 6   IKEILSFVLFTYGDSAITVSQVLQVPLLLLLAWFIVTRIGKLIRRALLAR-----KVAPD 60

Query: 131 RLKATVFHYSAMIIAFGIVFQMLGLTSKLGTLLVAGGITGIILGFASQTVVANFISGIFL 190
            +      Y  + IA  +V  +  L   +       G   I +GF +Q ++ NFISG  L
Sbjct: 61  AVHLFSRIYLILAIAIILVTSLEILNIPIKAFAFVSGAVAIGVGFGAQNIINNFISGWIL 120

Query: 191 YFDKPLKIGDSVQIGTNSGIVNDIKMMSTRIRTWDGVLVRIPNEKVFNSEIVNNKKYP-A 249
            +++P++IGD ++IG   G+V  I   ST IR  DGV + +PN ++  + + N       
Sbjct: 121 MWERPIRIGDFLEIGETKGVVESINTRSTLIRRNDGVHMLVPNSQLLENTVTNWTLIDNI 180

Query: 250 RRVDIVVGIAYKEDAQRAMDIISKILENMTYVLVEPEFQIFVNDLGNSSVDISVKAWTPS 309
            R  + VG+AY  D +R  DII + L+    +L  P       D G++++      W  +
Sbjct: 181 ARSTVRVGVAYGSDVERVADIIKQTLDEHEEILTTPSPVAIFEDFGDNALIFDGIFWVCA 240

Query: 310 EKWYD---VKMELVKNIKKEFDKEKVEIPFPQRTVWFPQDLKV 349
               D   ++ ++   I K F +  + I FPQR +    +LK+
Sbjct: 241 NTEADIRRIRSDIRFRIYKLFTQAGIVIAFPQRDLHLDGELKI 283