Pairwise Alignments

Query, 360 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

Subject, 1060 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score = 94.7 bits (234), Expect = 1e-23
 Identities = 75/289 (25%), Positives = 139/289 (48%), Gaps = 12/289 (4%)

Query: 59   ETAGLISTFVLAIFVVLALNVIESFVTYQLFGFDLKILTYSLLIIYFTYRISNRSKRYLL 118
            +T   I +F+  I +  + + ++     Q     LK L   L+I+ F+  I+      L 
Sbjct: 763  QTHSAIFSFLDGITLWTSSSTVDGIA--QQLPITLKSLLLGLIIVGFSLMIATNLPGLLE 820

Query: 119  LKGSQEGKFAEYRLKATVFHYSAMIIAFGIV--FQMLGLT-SKLGTLLVAGGITGIILGF 175
            L   Q     +    A       +++ FG++  F  LG+  SKL  L+ A     + LGF
Sbjct: 821  LMILQRLDLTQGTGFAITTVSRYLVVFFGMLSGFSTLGMEWSKLQWLVAA---LSVGLGF 877

Query: 176  ASQTVVANFISGIFLYFDKPLKIGDSVQIGTNSGIVNDIKMMSTRIRTWDGVLVRIPNEK 235
              Q + ANFISG+ + F+KP++IGD+V I   +G V+ I++ +T I  WD   + +PN+ 
Sbjct: 878  GLQEIFANFISGLIILFEKPVRIGDTVTIRELTGTVSKIQIRATTIVDWDRKEIIVPNKA 937

Query: 236  VFNSEIVN-NKKYPARRVDIVVGIAYKEDAQRAMDIISKILENMTYVLVEPEFQIFVNDL 294
                +++N +   P  RV + V +A   D  R    + + ++     L  PE +++    
Sbjct: 938  FITEQLINWSLSDPITRVIVYVSVARDSDPARVEAALYQAVKECDDALTTPEPEVWFAGF 997

Query: 295  GNSSVDISVKAWTP--SEKWYDVKMELVKNIKKEFDKEKVEIPFPQRTV 341
            G  + D  ++A+    + +W  ++ +L K + K+  +  +E+ +PQ  V
Sbjct: 998  GQHTQDYEIRAYAKDMNTRW-PLRHKLHKQVSKKLRENHLELAYPQLEV 1045