Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 404 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 69.7 bits (169), Expect = 1e-16
 Identities = 93/431 (21%), Positives = 186/431 (43%), Gaps = 54/431 (12%)

Query: 6   LFNMASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITL-- 63
           L   + + + + +L+S + I  I  G+ SV+ +++ G+    + ++    +L +   +  
Sbjct: 4   LLQQSWQTLLAHRLKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQMVAS 63

Query: 64  --TASAAQGSDDDEDPELTDMDVLILNGISDIEYVDVRVSTRNEVRFAGGRETAT---IT 118
             T+   QG       +LT+  +  +    +I+   +    R EV     R TA    ++
Sbjct: 64  GQTSEVWQGMPARRPIQLTESLMREVAQRPEIQRYSIVYENR-EVSITQQRGTAIGSMVS 122

Query: 119 GVDPAVWSQMTDEELSAGRLLQASDSN-----AVIISYYTATEAFDREIGINQMITIGNK 173
           GVD   +S    +     R     D +     A++  +  AT     ++ I     I   
Sbjct: 123 GVDRGYFSLAGLKLTLGSRDFSLHDQHNHRRVAILGDHVAATS----QLKIGDEFKIRGI 178

Query: 174 QFKVVGILEEDETQ-GFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEII 232
            F+V+GI++++ ++  FG      +  V++P      +  D   +  +    +GV     
Sbjct: 179 AFRVIGIMDDESSRFSFGD-----NQKVFIPSSTFKDI-WDTQPNMMLVLPAQGVSS--- 229

Query: 233 FTLYEDVNQTTALENIQKKLMMSRHVNEDNMDFTIRSPTVFEGPEQIISMLTTFLSFIAG 292
           + L E +  T A            H + ++ +  +  P    G   I ++L    +F+A 
Sbjct: 230 WALREQLRHTFA---------QRLHFSPEDQE-AVFLPDFGSGVAVITAILRGIQAFLAA 279

Query: 293 ---ISLIVGVTGISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLG 349
              +++ VG+ G++N MF  V E+TREIG+  AIGA  + I   F+    ++ ++G  +G
Sbjct: 280 SGMMTMAVGILGVANMMFLAVTERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVG 339

Query: 350 LVL---GTILSQ---IIVWFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAYNA 403
           L+L   G +L     +  W     + S+  ++  + + ++A+         A   PA  A
Sbjct: 340 LLLAYFGVLLLNHLGLPTWLGEPVITSTTVWLSMLVTSILALA--------AAYFPARRA 391

Query: 404 SKLKPVEALRS 414
           ++L+PV AL S
Sbjct: 392 AQLEPVIALSS 402