Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 407 a.a., probable ABC transporter permease protein from Synechococcus elongatus PCC 7942

 Score =  146 bits (368), Expect = 1e-39
 Identities = 123/418 (29%), Positives = 197/418 (47%), Gaps = 32/418 (7%)

Query: 8   NMASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTASA 67
           +MA K +++++LRS +T+LGI+IG ASVI ++  G       S+Q   +  + + +    
Sbjct: 10  SMAVKTLRANRLRSALTMLGIIIGNASVITMVGVGQGAQRLASEQFESLGPNVLFIVPGN 69

Query: 68  AQ----GSDDDEDPELTDMDVLILNGISDIEYVDVRVSTRNEVRFAGGRETATITGVDPA 123
                 G D  +   L D  V I   +     V  +VSTR  V + G   T  + GV P+
Sbjct: 70  QDTRRGGLDIPKTLVLADA-VAIATQVPTAGEVAPQVSTRQLVTYQGESSTTQVFGVTPS 128

Query: 124 VWSQMTDEELSAGRLLQASD----SNAVIISYYTATEAFDREIGINQMITIGNKQFKVVG 179
             + +    ++ GR     D        ++    A + F  +  +   I I    F+V+G
Sbjct: 129 FLT-VRSFSVARGRFFSDLDLSRAEQVAVLGSDLAIKLFGVQNPVGASIRIKGASFRVIG 187

Query: 180 ILEEDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFTLYEDV 239
           ++E   +     +G    + VY+P   V +  L   + Y       G+    I    +D 
Sbjct: 188 VMEPKGSF----LGNNQDDAVYLPLTTVSSRILGTTSPY-------GIEVSFISVAAKDA 236

Query: 240 NQTTALENIQKKLMMSRH--VNEDNMDFTIRSPT-VFEGPEQIISMLTTFLSFIAGISLI 296
           N   A +     L+  RH  + ED  DF +RS   V      + + LT  LS IAGISL+
Sbjct: 237 NSIDAAQFQITNLLRQRHRIIRED--DFEVRSQKDVLTIVGTVTNGLTLMLSAIAGISLL 294

Query: 297 VGVTGISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGTIL 356
           VG  GI N M  +V E+T+EIG+ KAIGA  KDI+  F+  + I+ L+GG +G  LG   
Sbjct: 295 VGGIGIMNIMLVSVSERTQEIGLRKAIGATQKDILNQFMIEAVILALLGGAIGTGLG--- 351

Query: 357 SQIIVWFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAYNASKLKPVEALRS 414
              I    A ++ +  +  +S  ++ I +  S   G+  G++PA  A++L P+ ALRS
Sbjct: 352 ---ITGVTAIALLTPLKAGVSPVAIAITVTISSGIGLFFGVVPARQAARLDPIVALRS 406