Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 435 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 89/452 (19%), Positives = 180/452 (39%), Gaps = 67/452 (14%)

Query: 8   NMASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTASA 67
           ++A + ++ + + S + +  I IGI   I  ++    +ST+ + +     SD +      
Sbjct: 7   DLAWRSIRKTPMMSLLMVFAISIGIGITIMTLNVHQVMSTNPAGER----SDNLLGVQLW 62

Query: 68  AQGSDD--DEDPELTDMDVLIL-NGISDIEYVDV----RVSTRNEVRFAGGRETATITGV 120
           +QG D   D    LT  DV+ L +G   +    +    +  T +        ++  +T  
Sbjct: 63  SQGQDTWRDYSAILTYQDVMQLRHGTLPVRQAAMFRTGKAVTTDNPDIEAEMQSIRVTDS 122

Query: 121 D-------PAVWSQMTDEELSAGRLLQASDSNAVIISYYTATEAFDREIGINQMITIGNK 173
           D       P ++  + D+E+             V+I      + FD    + + + +  K
Sbjct: 123 DFFALFSVPFLYGSVWDKEVDE------VPEYLVVIGKELNDKLFDGRNSVGETLYLNTK 176

Query: 174 QFKVVGILEE--------DETQGFGQMGGMS---------------SNTVYMPYEAVYTL 210
            +++VG+ ++        D T G  Q   +                 NT    +E + T 
Sbjct: 177 PYRIVGVTDDWSPKPRYYDLTTGSMQEAELLFVPFSLTPIEEFEVWGNTNGWKFETMLTY 236

Query: 211 E---LDDDASYSISEKEEGVYDEIIFTLYEDVNQTTALENIQKKLMMSRHVNEDNMDFTI 267
           +     + A      + +G      +  Y D +  T     Q++L       ++  D   
Sbjct: 237 QDRMASEKAWLQFWVEVDGAEQRKAYQEYLDAHVDT-----QQQL---GRFTDNTRDAWA 288

Query: 268 RSPTVFEGPE--QIISMLTTFLSFIAGISLIVGVTGISNTMFTTVLEKTREIGIMKAIGA 325
           R+  V E  +   ++      L  ++ + L+V +  I   M +  L++  EIG+ +AIGA
Sbjct: 289 RTLDVAELLDFHHVVPEDNKILIGLSLLFLLVCLVNILGLMLSKFLKRAPEIGVRRAIGA 348

Query: 326 KNKDIMLLFVFNSAIIGLVGGFLGLVLGTILSQIIV--WFIAQSMDSSYQFVLSIKSVVI 383
             + I    +     IG +GG  GL+   +  Q +   +F+ ++M +     L     +I
Sbjct: 349 SKRQIFAQHLVEVGCIGAIGGVFGLLWAWVALQYLAKRFFLEEAMSN-----LDASIWII 403

Query: 384 AIGCSLAAGIIAGIIPAYNASKLKPVEALRSE 415
           A   ++A+ ++AG+ PA+   K KP   L+S+
Sbjct: 404 APSIAIASAMLAGMYPAWVICKTKPSIYLKSQ 435