Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 650 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  119 bits (297), Expect = 3e-31
 Identities = 108/418 (25%), Positives = 188/418 (44%), Gaps = 41/418 (9%)

Query: 9   MASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTASAA 68
           MA + ++++  R+ +T+LG+VIG+A+V+ +++ G+     V  ++  M ++ + +   A 
Sbjct: 263 MAGRSLRANIFRTALTLLGVVIGVAAVVTMMAIGEGSKQDVLTRIQSMGTNLLLVRPGAP 322

Query: 69  QGSDDDEDPELTDMDVLILNGISDIEYV-DVRVSTRNEVRFAGGRETATITGVDPAVWSQ 127
                  D  LT  D   +  ++ +  V   R+++   VR  G     TI G  PA ++ 
Sbjct: 323 GIRPSGTDVSLTPTDAEAVAQLAGMAAVAPERMASGITVRREGIDYRTTINGTWPA-YAA 381

Query: 128 MTDEELSAGRLLQASDSNA----VIISYYTATEAFD-REIGINQMITIGNKQFKVVGILE 182
             D  ++ G    A+D  A     ++    A   F   E  +     + N  F V+G+LE
Sbjct: 382 AKDWPMAWGSFFDATDLQASAPVAVLGQTVAKNLFPGEEDPVGSYFLVRNVPFLVIGVLE 441

Query: 183 EDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFTLYEDVNQT 242
                 FGQ      + V +P    +            +    G Y   +    ED    
Sbjct: 442 AKGATPFGQD---QDDIVLIPLTTAF------------ARVSGGRYLSSLTARVEDATTI 486

Query: 243 TALENIQKKLMMSRHVNEDNMDFTIRSP-TVFEGPEQIISMLTTFLSFIAGISLIVGVTG 301
              +   + L+ +RH     +DF +R+  ++ E  E+  + LT  L  +A ISL+VG  G
Sbjct: 487 DESQAAIESLLQARH---GKVDFQVRNTQSLLEMVEKTQNSLTLLLGAVALISLLVGGIG 543

Query: 302 ISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGTILSQIIV 361
           + N M  +V E+TREIGI  A GA+  DI+L F   +  +  VGG  G+ LG   +  + 
Sbjct: 544 VMNIMLVSVTERTREIGIRLATGARASDILLQFNTEAVAVCGVGGLAGVGLGLGAALAVA 603

Query: 362 WFIAQSMDSSYQFVLSIKSV----VIAIGCSLAAGIIAGIIPAYNASKLKPVEALRSE 415
                      +F L ++      ++A  C+   G++ G +PA  A++L PV AL +E
Sbjct: 604 -----------EFGLPVRFTPGPPIVAFCCAFLTGLLFGYLPARKAARLDPVVALSAE 650