Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 421 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 72.0 bits (175), Expect = 3e-17
 Identities = 92/431 (21%), Positives = 177/431 (41%), Gaps = 44/431 (10%)

Query: 3   PLKLFNMASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEIT 62
           P  L  +A + +  ++LR+ I +  +V G+  V+ ++         ++    +M+ + + 
Sbjct: 10  PPMLALLAWRNLWRNRLRTSIMVCAMVFGLVGVVVMLGF-------MTGMYANMIDNAVA 62

Query: 63  LTASAAQGSDDDE--DPELTDM-----DVLI-LNGISDIEYVDVRVSTRNEVRFAGGRET 114
              S  Q  + D   DP++         VL  L+ I +++ V  R   +  +        
Sbjct: 63  WQTSHLQVHNKDYLLDPDINSRIRAPEPVLAELSQIPEVQGVSARFVVQGMLASPRASRG 122

Query: 115 ATITGVDPAVWSQMTD--EELSAGRLLQASDSNAVIISYYTATEAFDREIGINQMITIGN 172
             I GVDPA  +++T   + ++ G  L+A   + ++IS  TA+    R +G   ++T  N
Sbjct: 123 IRINGVDPAAEARVTPIADNITQGDWLEAGGRHPIVISEKTASRLKLR-LGSKVVLTFSN 181

Query: 173 KQFKVVGILEEDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEII 232
               V G         F   G   S +        Y    D  A   +    +GV++  I
Sbjct: 182 ADKAVSGA-------AFRVAGLYRSPSSTFDEANAYVRRADLTALAGL----DGVHEIAI 230

Query: 233 FTLYEDVNQTTALENIQKKLMMSRHVNEDNMDFTIRSPTVFEGPEQIISMLTTFLSFIAG 292
                D    +  + + K L+      +   D+    P +      II+ + T  + I  
Sbjct: 231 RLTKSDSLDNSRAKALAKILLSVLSPQDRVRDWQEIQPML----ATIIAQMDTSNAVILL 286

Query: 293 ISLIVGVTGISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVL 352
           I +     GI+N M   V E+TRE G++ AIG   + IM L +  S ++GL G  LGL+L
Sbjct: 287 IFISALGLGIANIMLMAVFERTREFGVLMAIGMVKRKIMGLILLESLLLGLTGALLGLML 346

Query: 353 GTILSQIIV-----------WFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAY 401
             ++  ++               A  + ++    +++   +  +   +   ++A + PA 
Sbjct: 347 SVLVIALLANTGIPLGNMADGLGAFGVSTTLYPQVTLGQYLSTLAMVVIVSLLAALYPAR 406

Query: 402 NASKLKPVEAL 412
              K +PV+A+
Sbjct: 407 QIVKQRPVDAM 417