Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 656 a.a., ABC transporter, ATP-binding/permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (411), Expect = 2e-44
 Identities = 120/419 (28%), Positives = 206/419 (49%), Gaps = 38/419 (9%)

Query: 9   MASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTASAA 68
           MA   + + +LR+++T+LGI+IGIASV+++++ G+     +   ++ M ++ I +     
Sbjct: 264 MALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNTIDIRPGLG 323

Query: 69  QGSDDDEDPELTDMDVLILNGISDIEYVDV---RVSTRNEVRFAGGRETATITGVDPAVW 125
            G  D     +  +     N + ++ YVD     +S+   VR      TA++ GV P  +
Sbjct: 324 FG--DRRSARVRTLTASDANALKNLPYVDSVTPSISSSVTVRLGNKAVTASVNGVGPEFF 381

Query: 126 SQMTDEELSAGRLLQASDSNAV----IISYYTATEAFDREIG-----INQMITIGNKQFK 176
            ++   EL+ G+       +A+    +I   T  + F    G     I Q+I +G+   +
Sbjct: 382 -RVRGYELAQGQFWDDDSVDALAQDAVIDDNTRKQLFPDSTGAMGSVIGQVIFLGDLPVR 440

Query: 177 VVGILEEDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFTLY 236
           ++G+ +  E+      G   +  V++PY  V        +   + +K     D I   L 
Sbjct: 441 IIGVTKPKESA----FGNSDALNVWVPYTTV--------SGRMVGKK---YLDGITVRLD 485

Query: 237 EDVNQTTALENIQKKLMMSRHVNEDNMDFTIRSPTVFEGPEQIISMLTTFLSFIAGISLI 296
           E V    A + I   L M RH  +D   FTI + T+ +  E+  + +T  +S IA ISL+
Sbjct: 486 ESVPSNAAEQGIITLLKM-RHGTQDF--FTINTDTIRQNIEKTTATMTLLISAIAVISLV 542

Query: 297 VGVTGISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGTIL 356
           VG  G+ N M  +V E+TREIG+  A+GA+  DI+  F+  + ++ L GG LG+ L  ++
Sbjct: 543 VGGIGVMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLI 602

Query: 357 SQIIVWFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAYNASKLKPVEALRSE 415
             +           S+Q + S  S+V A  CS   G++ G +PA NA++L PVEAL  E
Sbjct: 603 GVVFA-----QAGGSFQMIYSTTSIVAAFACSTLIGVLFGFLPARNAARLDPVEALARE 656