Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 413 a.a., putative ABC transporter, ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  103 bits (257), Expect = 1e-26
 Identities = 93/415 (22%), Positives = 184/415 (44%), Gaps = 29/415 (6%)

Query: 14  VKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITL----TASAAQ 69
           +  +K RS +T  G+  GI  ++A+I  G  L   +        ++   L    T  A +
Sbjct: 15  ITRNKTRSLLTAFGVFWGIFMLVALIGGGQGLQDMMQKNFEGFATNSGFLAAQKTGEAYK 74

Query: 70  GSDDDEDPELTDMDVLILNG-ISDIEYVDVRVSTRNEVRFAGGRE-TATITGVDPAVWSQ 127
           G       +L  +D+  L   + D+E +   V+        G +E   ++ G+ P  +  
Sbjct: 75  GFRKGRWWDLEAIDIERLRSQVKDVEVITPSVARWGSNAIYGDKEYDCSVKGLYPD-YLH 133

Query: 128 MTDEELSAGRLLQASD---SNAVIISYYTATEAFDR--EIGINQMITIGNKQFKVVGILE 182
           +  +E++ GR +   D   +  V +      E+  +  E    + + +    ++V+G+  
Sbjct: 134 IESQEMAYGRFINDVDIREARKVCVIGKRVYESLFKPGEDPCGKYVRVDGIYYQVIGM-- 191

Query: 183 EDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFTLYEDVNQT 242
              ++G   + G +S  V +P+  +         +Y++     G  D I FT+   V  +
Sbjct: 192 -SSSEGDMNIQGRASEAVTLPFTTM-------QQTYNLG----GQIDVICFTVKRGVKVS 239

Query: 243 TALENIQKKLMMSRHV--NEDNMDFTIRSPTVFEGPEQIISMLTTFLSFIAGISLIVGVT 300
                +++ +  + ++  N+      + +  +F   + + + +   +  +   +L+ G  
Sbjct: 240 DVQPQMEEIIKAAHYIAPNDKQALMYLNAEAMFSMVDNLFTGIHILIWMVGLGTLLAGAI 299

Query: 301 GISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGTILSQII 360
           G+SN M  TV E+T EIGI +AIGA+ KDI+   +  S ++  + G  G+    ++ Q +
Sbjct: 300 GVSNIMMVTVKERTTEIGIRRAIGARPKDILQQILSESMVLTTIAGMFGISFAVMVLQ-L 358

Query: 361 VWFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAYNASKLKPVEALRSE 415
           V   A S      F +S    V      +A G++AG+ PAY A  +KP+EA+R E
Sbjct: 359 VEMGANSNGGDAHFQVSFGLAVGTCALLIALGMLAGLAPAYRAMAIKPIEAIRDE 413