Pairwise Alignments

Query, 445 a.a., formylmethanofuran dehydrogenase subunit B from Methanococcus maripaludis S2

Subject, 905 a.a., Nitrate reductase (EC 1.7.99.4) (from data) from Pseudomonas fluorescens FW300-N2E2

 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 32/231 (13%)

Query: 11  CPVCGGTCDDIEVEYDKEKRDIVVRNACKMGAAKFREIVSNH-----------RITSPKI 59
           C  CG  C  + +E+D E+  I+  +      A F ++ S             R   P++
Sbjct: 10  CCYCGVGCG-VLIEHDGER--ILGVSGDPAHPANFGKLCSKGSTLHLTGDLAARALYPEL 66

Query: 60  RINGKLEDSK--WEDAIEKAAEILVNA------KRPLFFMGSETSCEAMTVGLHMGEYLG 111
           R+   L  ++  W+ A++ AA +              F++  +   E       +   L 
Sbjct: 67  RLGKGLARARSDWDSALDHAASVFAETIAEHGPDSVAFYISGQLLTEDYYAFNKLARALV 126

Query: 112 GI--VDSNSTICHGPSLMGVQEAGKAGAT--AGETKNRADVVIYWGVNPMCSMPRHMSRY 167
           G   +DSNS +C   +++G + +  A A   + E    +D V+  G N   + P      
Sbjct: 127 GTNNIDSNSRLCMSSAVVGYKRSLGADAPPCSYEDLEMSDCVMIVGSNMAYAHP------ 180

Query: 168 AVFPRGYFVQKGRKERKVITVDPRVSETAKGSDIHLQLKPSTDYELFSALM 218
            +F R    +  R + K+I +DPR ++T   +D+HL + P TD  LF  ++
Sbjct: 181 ILFRRLEEAKSRRPQMKIIVIDPRRTDTCDLADLHLAILPGTDVALFHGIL 231



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 124 PSLMGVQEAGKAG------ATAGETKNRADVVIYWGVNPM 157
           P+ MG +E G           A   ++RADV  YWGV  +
Sbjct: 336 PNAMGGRETGSLSNLLPGHREAANPEHRADVARYWGVEQL 375