Pairwise Alignments

Query, 362 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 341 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  342 bits (877), Expect = 9e-99
 Identities = 194/363 (53%), Positives = 233/363 (64%), Gaps = 27/363 (7%)

Query: 1   MKKFLVGFILFSMVVSVIPGAVVDDDTKCIWCTEWEPYGLYAGQNELVGNVSVRVCGDNL 60
           MKKFLVGFILFSM+ SVIPGAV  D            Y + AGQNE VG +++ V GD L
Sbjct: 1   MKKFLVGFILFSMIFSVIPGAVAID------------YDIIAGQNEKVGTLTLNVVGDTL 48

Query: 61  EYKYEITEPGWCISEIHLMALNESPN-DTSSSWYTK-YVTKKGNPKVGQFEINEE-GLCV 117
            + Y+I  P W + E+HL ALNE P  DTS+ WYT+ Y+TK GNPKVGQFEINEE    +
Sbjct: 49  YFNYDINSP-WELCEVHLAALNEVPEADTSNVWYTEGYLTKTGNPKVGQFEINEEFDPYL 107

Query: 118 KEYSGTLNLGEFNPCTDKLYIAAHAVVCECECECIFTGCGYKAIDEAEGWVIDTSNYIEG 177
            EYSG+LN+ E    +  + IAAHAVVC+   E I    GY+ +D    W I+ SNYI G
Sbjct: 108 TEYSGSLNISELG--SSNITIAAHAVVCKQGDEII--DYGYEPLDYP--WAINYSNYING 161

Query: 178 SKGDNDPKRYNESHCLGPYDSQDKDYYTFTSLGQGGSIELYFENNICGDGDPCTPDLEIY 237
           S    +  RYN   CLG  DS D+   TFTSLG GGSIEL F+ +ICGDGD  TPDLEIY
Sbjct: 162 SPDSTESWRYNPLLCLGENDSSDQGTKTFTSLGHGGSIELCFDGSICGDGDNSTPDLEIY 221

Query: 238 ETTWGHTSTWTESICVEAYYNGSYNELGCVTNTAGS-KDIRNIFVNYIYNLPDCVCIEKI 296
           E T+     W ESI +EAY+NG+Y  +G  TN  GS   + N+F+N IY+LP  VCIEKI
Sbjct: 222 EVTYNQNPNWVESIGIEAYFNGNYYPVGNATNNLGSTAGVTNMFINRIYDLPSGVCIEKI 281

Query: 297 RINDTSYVNANYDYDIDAVKANYWCVPEYEYICNCTGECETAWGNGTSFPGNNWAMYFEY 356
           RINDT    + +DYDIDAVKANY CVP Y  IC      +T +G G +FP NNWA Y  Y
Sbjct: 282 RINDTF---STHDYDIDAVKANYECVPIYNCICESAWANDTCFG-GETFPENNWATYVIY 337

Query: 357 SNC 359
             C
Sbjct: 338 PEC 340