Pairwise Alignments

Query, 494 a.a., rubredoxin from Methanococcus maripaludis S2

Subject, 1483 a.a., glutamate synthase subunit alpha (RefSeq) from Shewanella amazonensis SB2B

 Score =  130 bits (328), Expect = 2e-34
 Identities = 93/304 (30%), Positives = 141/304 (46%), Gaps = 10/304 (3%)

Query: 176  MSYGALSKNVKIALSKGSAAVKTAMCSGEGGMLEESFENAYKYILEYVPN-QYSITDENL 234
            MS GALS     AL+     +     SGEGG     F       ++ + + ++ +T   L
Sbjct: 863  MSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPRRFGTEKNSAIKQIASGRFGVTAHYL 922

Query: 235  KKVDAVEIKIGQSSKPGMGGHLPAEKVSEEIAKLRGFKVGQDIVSPSKFHDINNKDDLKN 294
               + ++IK+ Q +KPG GG LP  KVS EIA LR  + G  ++SP   HDI + +DL  
Sbjct: 923  INAEVLQIKVAQGAKPGEGGQLPGHKVSVEIAGLRYARPGVTLISPPPHHDIYSIEDLAQ 982

Query: 295  KVSNLREKSGGKPIGIKIAA----GDIEADLEVATYAKPDFITIDGRPGATAASPKFIKD 350
             + +L++ +    I +K+ +    G I   +  A YA  D IT+ G  G T ASP     
Sbjct: 983  LIFDLKQINPKALISVKLVSEPGIGTIATGVAKA-YA--DMITVSGYDGGTGASPLTSVK 1039

Query: 351  STSVPTIFALYRAREFFNKNGIT-DISLVITGGLRISSDFAKAIAIGADAIAIGTAALMA 409
                P    L    +    NG+   I L + GGL+  +D  KA  +GA++   GT  ++A
Sbjct: 1040 YAGSPWELGLAEVHQALVDNGLRHKIRLQVDGGLKTGTDVIKAALLGAESFGFGTVPMIA 1099

Query: 410  TACQQYRICDTGECPVGVTTQKPELKDRLKIELSAKKLSNYLRVSTEELKTFARLTGNKN 469
              C+  RIC    C  GV TQ   L+D+       +++  Y     EE++ +    G   
Sbjct: 1100 LGCKYLRICHLNNCATGVATQDKNLRDK-HFHGLPERVMTYFEFVAEEVREWMARLGVAK 1158

Query: 470  IHDL 473
              DL
Sbjct: 1159 FEDL 1162