Pairwise Alignments

Query, 494 a.a., rubredoxin from Methanococcus maripaludis S2

Subject, 557 a.a., ferredoxin-dependent glutamate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  143 bits (360), Expect = 2e-38
 Identities = 102/347 (29%), Positives = 159/347 (45%), Gaps = 25/347 (7%)

Query: 144 PLNNDEEVITKTIIGPKAKHPLIIETPIF-ITHMSYGALSKNVKIALSKGSAAVKTAMCS 202
           P + DE+     I GP    P   +   F I+ MS+G+LS N   AL+ G+        +
Sbjct: 132 PKHIDEQAKRVRIGGPDCTQPY--DASYFNISAMSFGSLSANAIEALNLGAKKAGCYHNT 189

Query: 203 GEGGMLEESFENAYKYILEYVPNQYSITDEN-------------LKKVDAVEIKIGQSSK 249
           GEGG      ++    + +     +   D+                ++  +EIK+ Q +K
Sbjct: 190 GEGGASPYHLKHGGDLVWQIGSGLFGCRDDEGNFNPDSFEKMAKRPQIKMIEIKLSQGAK 249

Query: 250 PGMGGHLPAEKVSEEIAKLRGFKVGQDIVSPSKFHDINNKDDLKNKVSNLREKSGGKPIG 309
           PG GG LP  K++ EIA +R   + +D VSP+   +      L N V  LRE SGGKP+G
Sbjct: 250 PGHGGVLPKAKITPEIALIRHIPMDKDCVSPAVNPECTTPIALLNFVKRLRELSGGKPVG 309

Query: 310 IKIAAGDIEADLEVA-----TYAKPDFITIDGRPGATAASPKFIKDSTSVPTIFALYRAR 364
            K+  G+    L +      T   PDFITIDG  G T A+P    +   +  +  +Y A 
Sbjct: 310 FKLCIGNPAEFLAICKAMLKTGITPDFITIDGAEGGTGAAPVEFSNRLGMMCLEGVYFAN 369

Query: 365 EFFNKNGIT-DISLVITGGLRISSDFAKAIAIGADAIAIGTAALMATACQQYRICDTGEC 423
                 G+   I+L+ +G    S D    IA+GAD +      +++  C Q R C+T  C
Sbjct: 370 NALVGVGLRHKITLIASGKTASSFDLLTKIAMGADLVNAARTMMLSLGCIQSRSCNTNMC 429

Query: 424 PVGVTTQKPELKDRLKIELSAKKLSNYLRVSTEELKTFARLTGNKNI 470
           P G+ TQ P     L +++ ++++ N+       LK F  L G+  +
Sbjct: 430 PTGIATQDPARSKALDVQVKSERVKNF---HHNTLKAFYELVGSMGL 473