Pairwise Alignments

Query, 494 a.a., rubredoxin from Methanococcus maripaludis S2

Subject, 1482 a.a., glutamate synthase subunit alpha (RefSeq) from Shewanella loihica PV-4

 Score =  133 bits (334), Expect = 5e-35
 Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 9/267 (3%)

Query: 176  MSYGALSKNVKIALSKGSAAVKTAMCSGEGGMLEESFENAYKYILEYVPN-QYSITDENL 234
            MS GALS     AL+     +     SGEGG     F +     ++ + + ++ +T   L
Sbjct: 862  MSIGALSPEAHEALAVAMNRLGGRSNSGEGGEDPRRFNSERNSAIKQIASGRFGVTAHYL 921

Query: 235  KKVDAVEIKIGQSSKPGMGGHLPAEKVSEEIAKLRGFKVGQDIVSPSKFHDINNKDDLKN 294
               + ++IK+ Q +KPG GG LP +KVS EIA LR  + G  ++SP   HDI + +DL  
Sbjct: 922  VNAEVLQIKVAQGAKPGEGGQLPGDKVSVEIAALRNARPGVTLISPPPHHDIYSIEDLAQ 981

Query: 295  KVSNLREKSGGKPIGIKIAA----GDIEADLEVATYAKPDFITIDGRPGATAASPKFIKD 350
             + +L++ +    I +K+ +    G I   +  A YA  D ITI G  G T ASP     
Sbjct: 982  LIFDLKQINPKAMISVKLVSEPGVGTIATGVAKA-YA--DMITISGYDGGTGASPITSVK 1038

Query: 351  STSVPTIFALYRAREFFNKNGIT-DISLVITGGLRISSDFAKAIAIGADAIAIGTAALMA 409
                P    L    +    NG+   I L + GGL+  +D  KA  +GA++   GT  ++A
Sbjct: 1039 YAGSPWELGLAEVHQSLVANGLRHKIRLQVDGGLKTGTDVIKAALLGAESFGFGTVPMIA 1098

Query: 410  TACQQYRICDTGECPVGVTTQKPELKD 436
              C+  RIC    C  GV TQ  +L+D
Sbjct: 1099 LGCKYLRICHLNNCATGVATQNKQLRD 1125