Pairwise Alignments

Query, 2062 a.a., cobaltochelatase subunit CobN from Methanococcus maripaludis S2

Subject, 598 a.a., cobalamin biosynthesis protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  183 bits (465), Expect = 5e-50
 Identities = 169/584 (28%), Positives = 264/584 (45%), Gaps = 65/584 (11%)

Query: 711  SYYTTSNLSAD-ID-LSQMDIIYIV-MVTQSAEPIENTIQDAIDNGAVVIGSNTYLPESN 767
            S+   S +S D +D L+  D+++I  M  +  E     IQ A D G  V  S    P +N
Sbjct: 53   SFIKLSEVSLDNLDRLTSYDMVFINGMGLRIVEEQRQQIQQAADKGIPVYTSMATNPANN 112

Query: 768  YSIPEEHADIESFKKYLSE-YWSGGASDDENFDNLIFYLAREYYNRTDLTVKEPTGLQRA 826
                    +++S ++ L   Y S G     N+ N++ Y+ +    +     +    ++R 
Sbjct: 113  I------CNLDSIQQNLIRGYLSNGGKT--NYRNMLNYIRKAIDGKASAVPEVEDPIERP 164

Query: 827  ---IYHPNMTSTPIE--FFTGDAGEYFAWYSNRTDGHSFDENAPTVGIAFYTSYYPNEMD 881
               +YH  +++   E  F T    E F   +N      + E A  + I         +M 
Sbjct: 165  SDMLYHAGISNPDDEQEFLTVADYEKFMQENNL-----YKEGARKIMIT-------GQMA 212

Query: 882  PIDKLIAGFESKGVNVIACYGDADNQLDGFFNYNNNTKVDAVISFLYRGTYFNMEE---- 937
                LI   E+ G NV          +  F ++    + DAVI+  +      M +    
Sbjct: 213  DATDLIKALENAGYNVYPV-----QSMTRFMSFIEEVQPDAVINMAHGRMGDKMVDYLKA 267

Query: 938  ----LGVPVIDGVLNGYMNTSEWIETSNPLPVTNMLR---IYRPESEGLIDPIMIGAEET 990
                L  P+    L       EW   ++P+ ++       I  PE +G I P  + A+  
Sbjct: 268  RNILLFAPLTINSL-----VDEW--ENDPMGMSGGFMSQSIVTPEIDGAIRPFALFAQ-- 318

Query: 991  VLEDNDTISKYMGHDTQIEWLINRTIAQCNLGIDPENEKKVAIIYYNHEGGKNNIGASYL 1050
              ED + +        +++  ++      NL   P  EKKVAI YY   G +N + A+ +
Sbjct: 319  -YEDKEGLRHSYAVPERLKTFVSTIDNYLNLKTKPNFEKKVAIYYYKGPG-QNALTAAGM 376

Query: 1051 EVAPSIVNLLNAMDSDGYNINESIIPNKTELVDLILLQGRNIGSWAPGELESLVETGEVE 1110
            EV PS+ NLL  M  +GYNI+  +  N  EL  +I  QG    ++A G     ++ G  E
Sbjct: 377  EVVPSLYNLLLRMKQEGYNIS-GLPANAQELGKMIQAQGAVFNAYAEGAFNDFMQNGHPE 435

Query: 1111 LIPEETYISWFNE-LPEERRNEVVETWGEAPGELMVYEYSNGSKYIVIPKISMSDNVIVA 1169
            LI +E Y SW  E L  E+  EVV+ +GE PG  MV         + I ++    NV++ 
Sbjct: 436  LITKEQYESWVKESLRPEKYQEVVDAFGEFPGNYMVTPDGK----LGIARLQFG-NVVLL 490

Query: 1170 PQPSRGWMDSYDTLYHDTELPPNHQYIAFYLWLQKEFDADVMVNMGRHGTVEWLPGKEFC 1229
            PQ + G  D+   + H T++ P H YIA YLW+Q  F AD +++ G HG++E+ P K+  
Sbjct: 491  PQNAAGSGDNSFQVVHGTDMAPPHTYIASYLWMQHGFKADALIHFGTHGSLEFTPRKQVA 550

Query: 1230 LLSDEWPALMVGDIPVVYPYVMDGTGEGMQAKRR--GSAIIIDH 1271
            L S++WP  +VG +P  Y Y +   GEGM AKRR   S  II H
Sbjct: 551  LCSNDWPDRLVGAVPHYYLYSIGNVGEGMMAKRRSYASLAIISH 594