Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 658 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  148 bits (373), Expect = 1e-39
 Identities = 132/560 (23%), Positives = 246/560 (43%), Gaps = 54/560 (9%)

Query: 187 DIVNNDDYWVDSLKERTGNEATIFLKN----VRISTTV-QTNGQDATGTKC--SDEVYNI 239
           +++NN+   VD  K  T   AT+F+++    +R+ST+V + +G  A GT    +   Y  
Sbjct: 107 EVLNNNFKEVDDFKAMTAGVATVFVRSGDDFIRVSTSVSKQDGTRAIGTVLDRAGPAYGP 166

Query: 240 ITNHQDYVGTANVLGSEYITKYSPIEDKDGNVVGIIF-----TGIPKAPFVAV------- 287
           + + Q Y+G A + G  Y+++Y+P+ D  G ++ +++     T    A F  +       
Sbjct: 167 VISGQSYIGRALLFGRFYMSQYTPVRDSSGKIIAVLYVGFDYTDAQNAQFENLKRFRIGQ 226

Query: 288 -----ITDTRNEIIIISLLGLLLSILIALYTGRKITKP---------IEELKKGTEEFGN 333
                + D +N+ ++       L    A  TG  I KP          E+       F  
Sbjct: 227 TGSLALLDEQNKWLVPPAGVQALDNATATITGL-IKKPGKGAFWTDTAEDFYSVAVPFEG 285

Query: 334 GNYDYKTTV-KTGDELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNR--- 389
           G +    ++ KT       S        ++  ++  +      L + L  + D++ +   
Sbjct: 286 GPWAVVASMPKTEIRAVTWSVGTQLAIGSLLAMLLAVGSAMWLLRSKLAPLGDLVRQAEA 345

Query: 390 VAKGDFTARADESR--ENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGA 447
           +  GD + R + S   E   L +A N     ++ +++ +R+  + +N + Q +     GA
Sbjct: 346 LGAGDLSVRLNVSSHDEIGQLARAFNQMSQALSTMVEHIRKASQEVNSRAQALSGLSSGA 405

Query: 448 EETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENS 507
            E   Q +   T +A A  + SA     ++ + NT               + ++E  + +
Sbjct: 406 YEGMEQQSGEITSMAGAVEEFSATSLNIADNMGNTE--------------RLAQENAQQT 451

Query: 508 ETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNAS 567
             G   ++ A S ++ I   ++     I  LG+  ++I  + G+I  IAEQT LLALNA+
Sbjct: 452 RIGRTSMDEASSSLEQIAGALNSTATVINTLGQRSQEIGGIVGVITSIAEQTNLLALNAA 511

Query: 568 IEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVD 627
           IEAARAG+ G+GFAVVA E++SLA   +++ ++I+  I  + +   + I    +G   + 
Sbjct: 512 IEAARAGEQGRGFAVVADEVRSLASRTRQATDEISSMINSIQQETGNAISTMEQGNLLMQ 571

Query: 628 KGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTA 687
           +G+     V  AL +I E    +  +   I    Q  S        N Q IA  + E   
Sbjct: 572 EGLSRNANVATALARIDEQSRSAGQQFAAITTATQEQSSTATLLSSNLQSIAMANSEQRE 631

Query: 688 TAEEVTASTEELNSIIEEIR 707
               +  + +EL  + +++R
Sbjct: 632 VVSNLALTAKELEKLAQDLR 651



 Score = 33.1 bits (74), Expect = 5e-05
 Identities = 24/146 (16%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 574 GDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAI 633
           G   + F  ++  + ++ E I+K+ +++N   + ++       +   +   E+     A+
Sbjct: 364 GQLARAFNQMSQALSTMVEHIRKASQEVNSRAQALSGLSSGAYEGMEQQSGEITSMAGAV 423

Query: 634 DEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVT 693
           +E +   L I +++  +       +  AQ  ++ T     +  E ++  E+         
Sbjct: 424 EEFSATSLNIADNMGNT-------ERLAQENAQQTRIGRTSMDEASSSLEQIAGALNSTA 476

Query: 694 ASTEELNSIIEEIRGIAEEVTQVAER 719
                L    +EI GI   +T +AE+
Sbjct: 477 TVINTLGQRSQEIGGIVGVITSIAEQ 502