Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 489 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  120 bits (302), Expect = 1e-31
 Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 38/349 (10%)

Query: 376 LATLLTNVSDVMNRVAK-GDFTARAD-ESREN--------NNLEKAINTAVSNVADLIKE 425
           L + L  + DVM  V + GD  AR   +SR+         N ++      VS VA     
Sbjct: 161 LLSHLNTLKDVMLHVERSGDLQARVPLDSRDEVGQMASAFNAMQGGYQRVVSTVAQAAAR 220

Query: 426 LREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEG 485
           L E    L   +  V   ++G +    Q A A  +++      +   +E+ ++ +N    
Sbjct: 221 LDEGASRLATSMNDVHKGMRGQQGETDQAATAINEMSATVHQIAEHARETRDQSQN---- 276

Query: 486 AKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKI 545
                         ++ +  +    V +VE +IS   S++  + + G+ I+ L  D ++I
Sbjct: 277 --------------ADRLAGDGHRVVGRVEKSIS---SLSQGVQQTGEMIEQLAADSQRI 319

Query: 546 NEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTI 605
           N V  +I  IAEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA+ ++ S ++I   I
Sbjct: 320 NGVVNVIHSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAKRVQDSTDEITQMI 379

Query: 606 EGVNKRIDDTIDL----GLKGKD---EVDKGVIAIDEVNDALLKIKESVNESAVKINGIK 658
            G+     D ++      LK  D   E      A++ + DA+ +++ES  + AV      
Sbjct: 380 SGLQSMTRDAVEFMQESSLKADDCVREAHDAAQALEAIADAVAQMRESNTQIAVAAEQQS 439

Query: 659 HGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIR 707
             A+  + +  G     +     +    +T+ E+ A + +L+  I ++R
Sbjct: 440 QVAEELNRSVTGIRDVTERTVEQTVSSASTSAELAALSADLSRAIGQLR 488



 Score = 52.0 bits (123), Expect = 7e-11
 Identities = 60/295 (20%), Positives = 120/295 (40%), Gaps = 36/295 (12%)

Query: 333 NGNYDYKTTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAK 392
           +G+   +  + + DE+ +++ +FN M    + ++ T+      L    + ++  MN V K
Sbjct: 178 SGDLQARVPLDSRDEVGQMASAFNAMQGGYQRVVSTVAQAAARLDEGASRLATSMNDVHK 237

Query: 393 GDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETAT 452
           G       +  E +    AIN   + V  + +  RE             D+ + A+  A 
Sbjct: 238 G----MRGQQGETDQAATAINEMSATVHQIAEHARE-----------TRDQSQNADRLAG 282

Query: 453 QVAEAATQVAEAASDQSAKLQESSEELENTYEGAKE-------VYSAAEET----VKSSE 501
                  +V ++ S  S  +Q++ E +E     ++        ++S AE+T    + ++ 
Sbjct: 283 DGHRVVGRVEKSISSLSQGVQQTGEMIEQLAADSQRINGVVNVIHSIAEQTNLLALNAAI 342

Query: 502 EIKENSETG------VEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDI 555
           E     E G       ++V N   R+Q  T+ I ++   ++ +  D  +  + + L  D 
Sbjct: 343 EAARAGEQGRGFAVVADEVRNLAKRVQDSTDEITQMISGLQSMTRDAVEFMQESSLKADD 402

Query: 556 A---EQTGLLALNASIEA-ARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIE 606
                     AL A  +A A+  ++    AV A +   +AEE+ +SV  I    E
Sbjct: 403 CVREAHDAAQALEAIADAVAQMRESNTQIAVAAEQQSQVAEELNRSVTGIRDVTE 457