Pairwise Alignments
Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Subject, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Score = 129 bits (323), Expect = 6e-34
Identities = 116/443 (26%), Positives = 205/443 (46%), Gaps = 31/443 (6%)
Query: 294 EIIIISLLGLLLSILIALYTGRKITKPIEEL-KKGTEEFGNGNYDYKTTVKTGDE-LQEL 351
+++ I + G +IL+ G+ + P ++L K TEE K + D L +L
Sbjct: 189 DVLAIEVPGKGYAILVN-QKGKIVAHPTQDLILKPTEEMSAQLTISKLNIAAKDHSLFQL 247
Query: 352 S-DSFNK--MAENVKNL--MKTMDMDKVELATLLTNVSDVMNRVAKGDFTARA------- 399
S D +K MAE V N + M MDK L L ++ V + G A
Sbjct: 248 SMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALLTSWFV 307
Query: 400 -DESRENNNLEKAINTAVSNVADLIKEL----REEVELLNIQIQKVEDEL----KGAEET 450
+ E N+ A+ DL + L ++EV LL + K D L K E
Sbjct: 308 ARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVREV 367
Query: 451 ATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETG 510
+ + + A A +A+ S +++ +E+ E+ SA E ++E +N+
Sbjct: 368 SVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNATQS 427
Query: 511 VEKVENAISRMQSITNVIDELGK----SIKMLGEDGKKINEVTGL---IKDIAEQTGLLA 563
V+ E+ ++MQ ID+L + +++++ E NE++ + I+ IAEQT LLA
Sbjct: 428 VQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNLLA 487
Query: 564 LNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGK 623
LNA+IEAARAG+ G+GFAVVA E++ L++ S E+I I G+ K + + +
Sbjct: 488 LNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESH 547
Query: 624 DEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSE 683
V+ V +++ +L I E++ + + I A+ S T N + + +S+
Sbjct: 548 KLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSD 607
Query: 684 EFTATAEEVTASTEELNSIIEEI 706
+ A++ + L+++ +E+
Sbjct: 608 QLAEEAQQSVQQAKSLHAMAQEL 630
Score = 55.8 bits (133), Expect = 6e-12
Identities = 79/389 (20%), Positives = 162/389 (41%), Gaps = 57/389 (14%)
Query: 287 VITDTRNEIIIISL-LGLLLSILIALYTGRKITKPIEELKKGTEEF-----GNGNYDYKT 340
V+ N+++++ + +GL + +++AL T + + + EL G+G+ +
Sbjct: 276 VLEQPLNDMLMVQIGIGLGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRL 335
Query: 341 TVKTGDELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARAD 400
V++ DE+ L+D FNK + + ++K + E++ LT +D A T +
Sbjct: 336 DVRSQDEVGLLADKFNKFVDRLHQMVKNVR----EVSVALTQGADH----AAASATQASK 387
Query: 401 ESRENNNLEKAINTAVSNVADLIKELREEVELL----NIQIQKVED---ELKGAEETATQ 453
R + + TAV+ +A E+ E +Q ED +++ ++++ Q
Sbjct: 388 RIRTQQDEITMVATAVTEMASATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQ 447
Query: 454 VAEAATQVAEAASDQSAKLQESSEELENTYEGAKE-----VYSAAEETVKSSEE------ 502
+A+ T S+ E S L +T G E +AA E ++ E+
Sbjct: 448 LAQELTGAVRIISELEVHANEISTIL-STIRGIAEQTNLLALNAAIEAARAGEQGRGFAV 506
Query: 503 -------IKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDI 555
+ + + E+++ I+ +Q +T ++ ++ E K + + D+
Sbjct: 507 VADEVRVLSQRTHASTEEIQTKIAGLQKVTTT------AVSVMTESHKLVETS---VADV 557
Query: 556 AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDT 615
QTG AS++A +A + + +A++I S AEE DIN E V + D
Sbjct: 558 -NQTG-----ASLQAI--SEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSDQL 609
Query: 616 IDLGLKGKDEVDKGVIAIDEVNDALLKIK 644
+ + + E+N + + K
Sbjct: 610 AEEAQQSVQQAKSLHAMAQELNKEISRFK 638
Score = 36.2 bits (82), Expect = 5e-06
Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 27/188 (14%)
Query: 544 KINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINH 603
++ + + DIAE G L + + E+ LA++ K V+ ++
Sbjct: 313 ELGNIANALADIAEGDGDLTRRLDVRSQ-------------DEVGLLADKFNKFVDRLHQ 359
Query: 604 TIEGVNK---RIDDTIDLGLKGKDEVDKGV-IAIDEVNDALLKIKESVNESAVKINGIKH 659
++ V + + D + K + DE+ + E + +A + ++
Sbjct: 360 MVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAEN 419
Query: 660 GAQNASENTE-------GALKNAQEIAALSEEFTATAE---EVTASTEELNSIIEEIRGI 709
A+NA+++ + ++ Q I L++E T E+ E+++I+ IRGI
Sbjct: 420 TAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGI 479
Query: 710 AEEVTQVA 717
AE+ +A
Sbjct: 480 AEQTNLLA 487