Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  124 bits (310), Expect = 2e-32
 Identities = 98/415 (23%), Positives = 181/415 (43%), Gaps = 76/415 (18%)

Query: 286 AVITDTRNEIIIISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTG 345
           AV   + N ++I+ +   LL++++A+   R I  PI    K  E+   G+   + +V   
Sbjct: 183 AVYDHSVNVLMIVLIAAFLLTVVLAIALTRSIVDPISASLKLAEDIAAGDLTRQLSVSGS 242

Query: 346 DELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESREN 405
           DE   L  + N M+ N++  +  +     +L+T    ++ +         T  AD + + 
Sbjct: 243 DEASRLMTALNTMSGNLRTTIHEISGASAQLSTAAVEMTSI---------TESADRTLQQ 293

Query: 406 NNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAA 465
            N E      +   A  + E+   VE                     +VA  AT  ++AA
Sbjct: 294 QNSE------IEQAATAVNEMSAAVE---------------------EVARNATSTSQAA 326

Query: 466 SDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSIT 525
              S                                    +++ G ++V   ++ MQ++T
Sbjct: 327 QQSSL-----------------------------------SADLGNQRVNETLTAMQNLT 351

Query: 526 NVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVAS 585
            +++     +  L    + I++V G+I+ IAEQT LLALNA+IEAARAG+ G+GFAVVA 
Sbjct: 352 GLVEGSSAQVTALAGQAQDISKVLGVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 411

Query: 586 EIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKE 645
           E+++LA   + S +++   I  +      T++   K   EV       ++  ++L +I +
Sbjct: 412 EVRALAHRTQTSTQEVEQMISAIQAGSSATVESMHKSTQEVHVTRKTAEDAGESLRQITD 471

Query: 646 SV---NESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTE 697
           SV   N   ++I        + + + + +L + +++A  S E   T + + ASTE
Sbjct: 472 SVLEINNRNLQIAAASEQQAHVARDVDRSLVSIRDLAVQSSE--GTRQTLIASTE 524



 Score = 38.5 bits (88), Expect = 9e-07
 Identities = 54/310 (17%), Positives = 115/310 (37%), Gaps = 24/310 (7%)

Query: 425 ELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASD--QSAKLQESSEELENT 482
           ++RE +E L       +  L   E    Q  EA  ++        Q   L  +  E   +
Sbjct: 87  KVREAIEALRANSDFYQKHLLSGEADRAQFEEANNKMGVYIDGLKQVVALDSADHERAVS 146

Query: 483 YEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVID---------ELGK 533
               ++   AA    K +     N+E  V   ++A +      NV+           +  
Sbjct: 147 LANGEQALKAAAYQEKLTALRGHNAEEAVVSGKDATAVYDHSVNVLMIVLIAAFLLTVVL 206

Query: 534 SIKMLGEDGKKINEVTGLIKDIA--EQTGLLALNASIEAARAGDA----GKGFAVVASEI 587
           +I +       I+    L +DIA  + T  L+++ S EA+R   A             EI
Sbjct: 207 AIALTRSIVDPISASLKLAEDIAAGDLTRQLSVSGSDEASRLMTALNTMSGNLRTTIHEI 266

Query: 588 KSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESV 647
              + ++  +  ++    E  ++ +            E+++   A++E++ A+ ++  + 
Sbjct: 267 SGASAQLSTAAVEMTSITESADRTLQQQ-------NSEIEQAATAVNEMSAAVEEVARNA 319

Query: 648 NESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIR 707
             ++         A   ++     L   Q +  L E  +A    +    ++++ ++  IR
Sbjct: 320 TSTSQAAQQSSLSADLGNQRVNETLTAMQNLTGLVEGSSAQVTALAGQAQDISKVLGVIR 379

Query: 708 GIAEEVTQVA 717
           GIAE+   +A
Sbjct: 380 GIAEQTNLLA 389