Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  120 bits (302), Expect = 1e-31
 Identities = 77/300 (25%), Positives = 148/300 (49%), Gaps = 8/300 (2%)

Query: 420 ADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEEL 479
           A L   +  E   L   + ++ D  +   + A + A+ + + AE+   Q ++  +S+  +
Sbjct: 226 AQLDLAMLSEEARLQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAI 285

Query: 480 ENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLG 539
                  +EV    + T  ++EE  + ++ G    + ++  ++ +   + ++G ++  L 
Sbjct: 286 NQMAATIQEVTHNVQNTAHAAEEADKLAQQGRGLADESLLAIRHMATSVTDIGNAVGELA 345

Query: 540 EDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVE 599
           +  + I  V  +I  IA+QT LLALNA+IEAARAG+ G+GFAVVA E++SLA   + S E
Sbjct: 346 DATQSIGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTE 405

Query: 600 DINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKH 659
            I   I  +    D  +    KG+    + V +++ V  AL    + +++S  +I G+  
Sbjct: 406 QIQQIITSLRDGADRAVKTASKGEQISQESVASVEAVQKAL----DGISQSVTRITGMSQ 461

Query: 660 GAQNASEN----TEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQ 715
              +ASE      E   +    IA L +E  + A++ +  + EL  + + +  +AE  ++
Sbjct: 462 QMASASEEQSHVAETISQQITRIAQLCDESASQAQQGSQISSELEEMAQYLHSLAERFSR 521



 Score = 39.7 bits (91), Expect = 4e-07
 Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 586 EIKSLAEE--IKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKI 643
           ++  L+EE  ++ ++  +  T E V +    +  L L+  + +D+     D+   A    
Sbjct: 229 DLAMLSEEARLQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATA---- 284

Query: 644 KESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSII 703
              +N+ A  I  + H  QN +   E A K AQ+   L++E       +  S  ++ + +
Sbjct: 285 ---INQMAATIQEVTHNVQNTAHAAEEADKLAQQGRGLADESLLAIRHMATSVTDIGNAV 341

Query: 704 EEIRGIAEEVTQVAERVTKKSSQ 726
            E+    + +  V + +T  + Q
Sbjct: 342 GELADATQSIGSVVDVITSIAQQ 364



 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 30/150 (20%), Positives = 65/150 (43%), Gaps = 7/150 (4%)

Query: 584 ASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKI 643
           A +  +   ++  +++++ H ++      ++   L  +G+   D+ ++AI  +  ++  I
Sbjct: 278 ADQSATAINQMAATIQEVTHNVQNTAHAAEEADKLAQQGRGLADESLLAIRHMATSVTDI 337

Query: 644 KESVNESA---VKINGIKHGAQNASENTEGALKNAQEIAALSEE----FTATAEEVTAST 696
             +V E A     I  +     + ++ T     NA   AA + E    F   A+EV +  
Sbjct: 338 GNAVGELADATQSIGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLA 397

Query: 697 EELNSIIEEIRGIAEEVTQVAERVTKKSSQ 726
               S  E+I+ I   +   A+R  K +S+
Sbjct: 398 SRTQSSTEQIQQIITSLRDGADRAVKTASK 427



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 50/246 (20%), Positives = 101/246 (41%), Gaps = 31/246 (12%)

Query: 352 SDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKA 411
           ++  +K+A+  + L    D   + +  + T+V+D+ N V +      AD ++        
Sbjct: 306 AEEADKLAQQGRGLA---DESLLAIRHMATSVTDIGNAVGE-----LADATQ-------- 349

Query: 412 INTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAK 471
              ++ +V D+I  + ++  LL +       E   A E     A  A +V   AS   + 
Sbjct: 350 ---SIGSVVDVITSIAQQTNLLALN---AAIEAARAGEQGRGFAVVADEVRSLASRTQSS 403

Query: 472 LQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRM-QSITNVIDE 530
            ++  + + +  +GA        +T    E+I + S   VE V+ A+  + QS+T +   
Sbjct: 404 TEQIQQIITSLRDGADRAV----KTASKGEQISQESVASVEAVQKALDGISQSVTRI--- 456

Query: 531 LGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSL 590
            G S +M     ++ +    + + I     L   +AS +A +          +A  + SL
Sbjct: 457 TGMSQQMASASEEQSHVAETISQQITRIAQLCDESAS-QAQQGSQISSELEEMAQYLHSL 515

Query: 591 AEEIKK 596
           AE   +
Sbjct: 516 AERFSR 521