Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 540 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer:CHASE3 from Pseudomonas syringae pv. syringae B728a

 Score =  134 bits (336), Expect = 2e-35
 Identities = 82/323 (25%), Positives = 167/323 (51%), Gaps = 15/323 (4%)

Query: 385 DVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDEL 444
           D    +A G      D S  ++ L KA +   + + ++I+++ +    L + +Q++    
Sbjct: 225 DAATAIANGKLDTVIDTS-SHDELPKAFDRMQNRLREMIQQISQAANQLVVAVQQIS--- 280

Query: 445 KGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIK 504
            GA E   Q++ A  + + +AS  +A ++E +  + +  E A E +  A  + + S++  
Sbjct: 281 -GASE---QLSGAIQEQSTSASAMAATIEELTVSIHHVSENADEAHELASRSGQQSKD-- 334

Query: 505 ENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLAL 564
                G + +EN +S M  I   +      +  LG+  + I+ +  +I+ IA+QT LLAL
Sbjct: 335 -----GAQVIENTLSSMNGIARTVQLSSTQVAGLGQHSEHISSIVSVIQGIADQTNLLAL 389

Query: 565 NASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKD 624
           NA+IEAARAG+ G+GFAVVA E++ LA+   KS ++I   IE +   + +T++    G  
Sbjct: 390 NAAIEAARAGEQGRGFAVVADEVRLLAQNTGKSTKEIAGMIEKIQAGVRETVESMRSGVQ 449

Query: 625 EVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEE 684
           EV++GV        A+++I++S  +    ++ I    +  +  ++   +N +  A ++E+
Sbjct: 450 EVNEGVEMAGTAGQAIIEIRDSSGKVLQVVDQISFALREQTAASQDVARNVERSAQMAEQ 509

Query: 685 FTATAEEVTASTEELNSIIEEIR 707
              + +E+  ++  L ++   ++
Sbjct: 510 NNISVQELLKTSGGLKNLATSLQ 532



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 21/154 (13%), Positives = 67/154 (43%)

Query: 564 LNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGK 623
           L+  I+ +   +  K F  + + ++ + ++I ++   +   ++ ++   +       +  
Sbjct: 235 LDTVIDTSSHDELPKAFDRMQNRLREMIQQISQAANQLVVAVQQISGASEQLSGAIQEQS 294

Query: 624 DEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSE 683
                    I+E+  ++  + E+ +E+    +     +++ ++  E  L +   IA   +
Sbjct: 295 TSASAMAATIEELTVSIHHVSENADEAHELASRSGQQSKDGAQVIENTLSSMNGIARTVQ 354

Query: 684 EFTATAEEVTASTEELNSIIEEIRGIAEEVTQVA 717
             +     +   +E ++SI+  I+GIA++   +A
Sbjct: 355 LSSTQVAGLGQHSEHISSIVSVIQGIADQTNLLA 388



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 655 NGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEE----IRGIA 710
           N ++   Q  S+     +   Q+I+  SE+ +   +E + S   + + IEE    I  ++
Sbjct: 256 NRLREMIQQISQAANQLVVAVQQISGASEQLSGAIQEQSTSASAMAATIEELTVSIHHVS 315

Query: 711 EEVTQVAERVTKKSSQFK 728
           E   +  E  ++   Q K
Sbjct: 316 ENADEAHELASRSGQQSK 333