Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 658 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  149 bits (377), Expect = 3e-40
 Identities = 136/557 (24%), Positives = 234/557 (42%), Gaps = 52/557 (9%)

Query: 189 VNNDDYWVDSLKERTGNEATIFLKN----VRISTTV-QTNGQDATGTKCSDE--VYNIIT 241
           +NND   VD  +  T   ATIF+++    +RIST++ + +G  A GT    +   Y  + 
Sbjct: 109 LNNDFTEVDEFRSMTAGVATIFVRSGDDFIRISTSLSKQDGTRAIGTVLDRKGAAYERLI 168

Query: 242 NHQDYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIPKAPFVAVITD--------TRN 293
             Q YVG A +    Y+T+YSP+ D  G ++  +F G           D        +  
Sbjct: 169 AGQSYVGKAVLFDRYYMTQYSPVRDSSGKIIAALFVGFDYTDAQKTQFDNLKSFRIGSTG 228

Query: 294 EIIIISLLGLLLSILIALYTGRKITKPIEEL--KKGTEEF---GNGNYDYKTTVKTGDEL 348
            + ++   G  L     + +     K + EL  K G  +F   G+ NY        G   
Sbjct: 229 SLALLDDKGTWLVPPAGVKSLEGAAKSVAELASKPGKAQFWDDGDDNYYSVGQPFAGGPW 288

Query: 349 QELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDV----------------MNRVAK 392
             ++    K    V   + T       LA L+  +S +                 + +  
Sbjct: 289 TVIASMPRKEISEVTWHVGTQLAIGSLLAMLIAVISAIWLLRSKLRPLSELVRQADALGA 348

Query: 393 GDFTARAD--ESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEET 450
           GD + R +   + E   L  + N     ++ ++  +R   + ++ +   +     GA E 
Sbjct: 349 GDLSVRLNVTSNDEIGQLSGSFNKMSEALSSMVSHIRTAAQEVSTRANVLSGLSGGAFEG 408

Query: 451 ATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETG 510
             Q +   T +A A  + SA     ++ + N              T + ++E  + +  G
Sbjct: 409 MEQQSGEITSMAGAVEEFSATSMNIADNMGN--------------TERLAQENAQQTRIG 454

Query: 511 VEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEA 570
              +E A S +Q I   +    K I  LG+  ++I  + G+I  IA+QT LLALNA+IEA
Sbjct: 455 RTSMEEASSSLQQIATSLSSTAKVIDTLGQRSQEIGSIVGVITSIADQTNLLALNAAIEA 514

Query: 571 ARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGV 630
           ARAG+ G+GFAVVA E++SLA   +++ ++I+  I  + +   + I    +G   + +G+
Sbjct: 515 ARAGEQGRGFAVVADEVRSLASRTREATDEISGMIASIQQETGNAISTMQQGNTLMQEGL 574

Query: 631 IAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAE 690
               +V  AL +I E    +  +   I    Q  S        N Q IA  + E      
Sbjct: 575 SLNAKVASALAQIDEQSRSAGHQFAAITTATQEQSSTATMLSSNLQSIAMANSEQRQVMS 634

Query: 691 EVTASTEELNSIIEEIR 707
            +  + +ELN +  E+R
Sbjct: 635 NLAITAQELNGLATELR 651



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 45/277 (16%), Positives = 110/277 (39%), Gaps = 18/277 (6%)

Query: 444 LKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEI 503
           +K  E  A  VAE A++  +A         +  ++ ++ Y    + ++    TV +S   
Sbjct: 246 VKSLEGAAKSVAELASKPGKA---------QFWDDGDDNYYSVGQPFAGGPWTVIASMPR 296

Query: 504 KENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLA 563
           KE SE     V   +    +I +++  L   I  +     K+  ++ L++  A+  G   
Sbjct: 297 KEISE-----VTWHVGTQLAIGSLLAMLIAVISAIWLLRSKLRPLSELVRQ-ADALGAGD 350

Query: 564 LNASIEAARAGDAGK---GFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGL 620
           L+  +      + G+    F  ++  + S+   I+ + ++++     ++       +   
Sbjct: 351 LSVRLNVTSNDEIGQLSGSFNKMSEALSSMVSHIRTAAQEVSTRANVLSGLSGGAFEGME 410

Query: 621 KGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAA 680
           +   E+     A++E +   + I +++  +           +    + E A  + Q+IA 
Sbjct: 411 QQSGEITSMAGAVEEFSATSMNIADNMGNTERLAQENAQQTRIGRTSMEEASSSLQQIAT 470

Query: 681 LSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVA 717
                    + +   ++E+ SI+  I  IA++   +A
Sbjct: 471 SLSSTAKVIDTLGQRSQEIGSIVGVITSIADQTNLLA 507