Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 953 a.a., HAMP domain-containing methyl-accepting chemotaxis protein from Synechocystis sp000284455 PCC 6803

 Score =  160 bits (406), Expect = 2e-43
 Identities = 144/657 (21%), Positives = 296/657 (45%), Gaps = 63/657 (9%)

Query: 80  ELLVNDDKEVLYDFAEKMKKSSEVDLVAFTDKNGNIISSSDNVQTNLKPVISKLLSNEVQ 139
           ++L N+      ++A  + +   +   A   +NG I   S+ V   +          +++
Sbjct: 306 DILKNETASRDIEYATLVGQDQRIIASANAQRNGQIFDPSNLVTLRMG------YPGQIK 359

Query: 140 SSFEIISGSEASKYSDYKVNNIN--DALAICVVAPVY--HSGELVGTVTLVDIVNNDDYW 195
            S  I+S  E  K     ++N+   +AL    V PV    S + +GT+   DIVN  D  
Sbjct: 360 FS-TIVSKEELEKELPPGIDNLEQENALIRYTVTPVQDPQSKKNIGTLIAGDIVNGKDAI 418

Query: 196 VDSLKERT--GNEATIFLK---NVRISTTVQTNGQDATGTKCSDEV----YNIITNHQD- 245
           V +  +    G  A  ++     ++++T+    G     TK  + V      ++   Q+ 
Sbjct: 419 VKNTVDNFDGGYSAVYYIDPNGEIQLATSNLKTGS-GQNTKVYENVAFPDLELLKKAQEN 477

Query: 246 ----YVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIPKAPFVAVITDTRNEIIIISLL 301
                VG   V G         I+D  G  + ++  G  +  F  ++  T    I +  +
Sbjct: 478 PDMPLVGRTTVEGEPLTVAIKVIKDIQGQPLALLVRGTSEVEFNDLLERTLLLQIGVGAV 537

Query: 302 GLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAEN 361
            LL++ +IA + G+ +TKP++ L+   ++ G G    +  V++ DE+ +L+ +FN MAE 
Sbjct: 538 ALLVAAIIAYWLGKTLTKPLKNLQTTAQKLGEGETGVRAEVESKDEVGQLAVTFNAMAEQ 597

Query: 362 VKNLMKTMDMDKVE------------------LATLLTNVSDVMNRVAKGDFTARAD-ES 402
           V+   +++    +E                  +  LLT++ +     ++GD T R+  E+
Sbjct: 598 VEASTRSLQETSLERQQEAEKQRQLKEELQDGVVRLLTDIEES----SRGDLTVRSSVEA 653

Query: 403 RENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVA 462
                +  A N  ++ +  L+K++ +    ++ Q Q+   E+       T +++ A + A
Sbjct: 654 GAVGAIADAFNATLAGLRKLVKQVVDTATEVSGQAQEDSQEI-------TSLSDNALEQA 706

Query: 463 EAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQ 522
            A    +A + E ++ +E+       V  +A+     +++  E ++ G   ++  +  + 
Sbjct: 707 RALEFATASVAEMAQSIES-------VAISAQTAAAIAKQGNEAAQQGQNTMDETVESIY 759

Query: 523 SITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAV 582
            +   + E+ K  K L E   +I+++ G+I  I+E+T LLA NASIEAARAG+ G+GF +
Sbjct: 760 KVRGRVAEISKKSKRLAESSLEISKIVGIISGISEKTNLLAFNASIEAARAGENGQGFRI 819

Query: 583 VASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLK 642
           VA E++ LAE +  S ++I   I  + +       L  +  +EV  G   + +  + L  
Sbjct: 820 VADEVRRLAEMVTLSAQEIEQVILSIQEETSQMSQLMEESTNEVVTGTQLVQKTKETLQN 879

Query: 643 IKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEEL 699
           + +   E    ++ I    ++    ++   +  Q +A++++  +  ++ V+ S + L
Sbjct: 880 LAQISEEIDTVLDSISRNTESQRLASQMVTETVQNVASVAKATSDKSQLVSQSLQSL 936



 Score = 50.4 bits (119), Expect = 4e-10
 Identities = 70/326 (21%), Positives = 133/326 (40%), Gaps = 45/326 (13%)

Query: 423 IKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENT 482
           +K L+   + L      V  E++  +E   Q+A     +AE     +  LQE+S E +  
Sbjct: 557 LKNLQTTAQKLGEGETGVRAEVESKDEVG-QLAVTFNAMAEQVEASTRSLQETSLERQQE 615

Query: 483 YEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDG 542
            E  +++    ++ V       E S  G   V +++    ++  + D    ++  L +  
Sbjct: 616 AEKQRQLKEELQDGVVRLLTDIEESSRGDLTVRSSVEA-GAVGAIADAFNATLAGLRKLV 674

Query: 543 KKI----NEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSV 598
           K++     EV+G  ++ +++   L+ NA +E ARA                  E    SV
Sbjct: 675 KQVVDTATEVSGQAQEDSQEITSLSDNA-LEQARA-----------------LEFATASV 716

Query: 599 EDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVK----- 653
            ++  +IE V         +  +G +   +G   +DE  +++ K++  V E + K     
Sbjct: 717 AEMAQSIESVAISAQTAAAIAKQGNEAAQQGQNTMDETVESIYKVRGRVAEISKKSKRLA 776

Query: 654 ------------INGIKHG----AQNASENTEGALKNAQEIAALSEEFTATAEEVTASTE 697
                       I+GI       A NAS     A +N Q    +++E    AE VT S +
Sbjct: 777 ESSLEISKIVGIISGISEKTNLLAFNASIEAARAGENGQGFRIVADEVRRLAEMVTLSAQ 836

Query: 698 ELNSIIEEIRGIAEEVTQVAERVTKK 723
           E+  +I  I+    +++Q+ E  T +
Sbjct: 837 EIEQVILSIQEETSQMSQLMEESTNE 862



 Score = 47.0 bits (110), Expect = 5e-09
 Identities = 44/233 (18%), Positives = 100/233 (42%), Gaps = 23/233 (9%)

Query: 325 KKGTEEFGNGNYDYKTTV----KTGDELQELSDSFNKMAENVKNLMKTMDMDKVELATLL 380
           K+G E    G      TV    K    + E+S    ++AE+   + K        +  ++
Sbjct: 738 KQGNEAAQQGQNTMDETVESIYKVRGRVAEISKKSKRLAESSLEISK--------IVGII 789

Query: 381 TNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKV 440
           + +S+  N +A   F A  + +R   N           VAD   E+R   E++ +  Q++
Sbjct: 790 SGISEKTNLLA---FNASIEAARAGEN-----GQGFRIVAD---EVRRLAEMVTLSAQEI 838

Query: 441 EDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSS 500
           E  +   +E  +Q+++   +        +  +Q++ E L+N  + ++E+ +  +   +++
Sbjct: 839 EQVILSIQEETSQMSQLMEESTNEVVTGTQLVQKTKETLQNLAQISEEIDTVLDSISRNT 898

Query: 501 EEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIK 553
           E  +  S+   E V+N  S  ++ ++    + +S++ L +    +    G  K
Sbjct: 899 ESQRLASQMVTETVQNVASVAKATSDKSQLVSQSLQSLAKTAVDLQTAAGKFK 951