Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 839 a.a., methyl-accepting chemotaxis sensory transducer from Synechococcus elongatus PCC 7942

 Score =  132 bits (333), Expect = 5e-35
 Identities = 107/461 (23%), Positives = 213/461 (46%), Gaps = 49/461 (10%)

Query: 290 DTRNEIIIISLLGLLL----SILIALY----TGRKITKPIEELKKGTEEFGNGNYDYKTT 341
           + RN +++ S+  + +    S  IAL     TG++    +E L +  ++  NG+++    
Sbjct: 404 EARNRVVLASMASMAVAGAASAGIALQLQNRTGKRYRDLLERLNEQCQQMSNGDFETPLQ 463

Query: 342 VKTGDELQELSDSFNKMAENV-------KNLMKTMDMDKVELATLLTNVSDVMNRVAKGD 394
           V   D++  L+  F++M   +       +  + T++  +  L   +  + D +  VA GD
Sbjct: 464 VGGNDDVGMLALRFDRMRSVLGDRINRQEKRLTTLEQQREGLQNQVIRLLDDVEGVAHGD 523

Query: 395 FTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQV 454
            T +A+ + +           +  VAD            N+ IQ + + +    + A QV
Sbjct: 524 LTVQAEVTAD----------VLGAVADSF----------NLTIQNLREIVAQVRDAALQV 563

Query: 455 AEAATQVAEAASDQSAKLQESSEELENTY-------EGAKEVYSAAEETVKSSEEIKENS 507
             AAT   ++A + SA+    +EEL           E  + V  +A E    +    + +
Sbjct: 564 NAAATDNEQSAKNLSAEALHQAEELAAALNSVQVMTESIQRVAISASEAESVARAASQTA 623

Query: 508 ETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNAS 567
             G E V+  +S +  I   + E  + +K L E  ++I+++  LI  +A +T LLALNAS
Sbjct: 624 LKGGEAVDKTLSGILRIRETVAETTRKVKKLAESSQEISKIVALISQVASRTNLLALNAS 683

Query: 568 IEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVD 627
           IEAARAG AG+GFA+VA E++ LA+   KS ++I   +  +       +    +G  +V 
Sbjct: 684 IEAARAGQAGRGFAIVADEVRQLADRAAKSSKEIEQIVLKIQSETGLVMTAMEEGTQQVI 743

Query: 628 KGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTA 687
           +G    ++   AL    + + + + KI+ +    Q+ + +T      ++ +A + +    
Sbjct: 744 QGTRLAEQARGAL----DEIIQVSTKIDDL---VQSITADTVQQTAMSRSMAEVMQSVET 796

Query: 688 TAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTKKSSQFK 728
           TA+  +   +++ + ++ +  IA  + +  +R   ++S  K
Sbjct: 797 TAQNTSQEAQQVAASLQGLVNIAGTLRESVDRFRLQASAAK 837



 Score = 40.4 bits (93), Expect = 4e-07
 Identities = 77/375 (20%), Positives = 138/375 (36%), Gaps = 54/375 (14%)

Query: 397 ARADESRENNNLEKAINTAVSNVADLI---------KELREEVELLNIQIQKVEDELKGA 447
           A A E+ E    E A+  A++  A+ +         + L  EV+L   Q     DE    
Sbjct: 192 AEAAEAEETAVAEPAVEEAIAPAAETLIASEPEAIPEPLSPEVDLAESQPPITADETVVE 251

Query: 448 EETATQVAEAAT--QVAEAASDQSAKLQESSEELENTY--EGAKEVYSAAEETVKSSEEI 503
            + A + A  A   +VA   +  +A L+E      +    E AKEV  AAE  V    E+
Sbjct: 252 VDLAAEFAALAEPEEVASEPAASTAGLEEPGPVSFDAIADEVAKEVLGAAETAVAPQPEL 311

Query: 504 K-------ENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIA 556
           K       EN  T     E A    Q +T+ +                 +     +    
Sbjct: 312 KASPAPVLENLPTPPNLAEAAAIARQPVTSPLRPQETKANRAAVAATPASNAPKALPTPP 371

Query: 557 EQT-----GLLALNASIEAARAGDAG-----------------KGFAVVASEIKSLAEEI 594
           +QT     GL+AL +++ AA  G  G                    AV  +    +A ++
Sbjct: 372 KQTAETRVGLIALVSALAAAAVGVVGWQASTPEARNRVVLASMASMAVAGAASAGIALQL 431

Query: 595 K-KSVEDINHTIEGVNKRI------DDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESV 647
           + ++ +     +E +N++       D    L + G D+V    +  D +   L    + +
Sbjct: 432 QNRTGKRYRDLLERLNEQCQQMSNGDFETPLQVGGNDDVGMLALRFDRMRSVL---GDRI 488

Query: 648 NESAVKINGIKHGAQNASENTEGALKNAQEIA--ALSEEFTATAEEVTASTEELNSIIEE 705
           N    ++  ++   +         L + + +A   L+ +   TA+ + A  +  N  I+ 
Sbjct: 489 NRQEKRLTTLEQQREGLQNQVIRLLDDVEGVAHGDLTVQAEVTADVLGAVADSFNLTIQN 548

Query: 706 IRGIAEEVTQVAERV 720
           +R I  +V   A +V
Sbjct: 549 LREIVAQVRDAALQV 563