Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 1406 a.a., methyl-accepting chemotaxis sensory transducer with phytochrome sensor from Synechococcus elongatus PCC 7942

 Score =  137 bits (344), Expect = 5e-36
 Identities = 100/415 (24%), Positives = 194/415 (46%), Gaps = 30/415 (7%)

Query: 308  LIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAENVKNLMK 367
            LIAL+   + +   +  +   + F          +   D LQ+   + ++  +  +   +
Sbjct: 1012 LIALFVAHQCSGARDWQQSEIDLFSQLATQIGLALARADFLQQAETARDRAEQLAQEQQQ 1071

Query: 368  TMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELR 427
              +  + EL  LL++V D     ++GD T RAD S             +S VAD+   L 
Sbjct: 1072 RTEAIQAELIQLLSDVEDA----SRGDLTVRADISAGE----------ISTVADIFNSLI 1117

Query: 428  EEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAK 487
            E +  + +Q++         ++  T +   A  +   A+D  ++ ++  + L    E +K
Sbjct: 1118 ESLRAVVVQVKA------STQKVNTSLDSDANSMQRLAADSQSQAEKIKKTLNAVAEMSK 1171

Query: 488  EVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNV---IDELGKSIKMLGEDGKK 544
             +   +    +++E  +++S+T +   +     ++SI ++   + E  K +K LGE  ++
Sbjct: 1172 SILDVSNTANQAAEVARKSSQTAISSGQTMDETVRSILHLRETVAETAKKVKRLGESSQQ 1231

Query: 545  INEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHT 604
            I++V  LI  IA QT LLA+NASIEAARAG+ G+GFAVVA E+  LA     + ++I   
Sbjct: 1232 ISKVISLINQIALQTNLLAINASIEAARAGEEGRGFAVVAEEVGQLATRSANATKEIEQI 1291

Query: 605  IEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNA 664
            +E + +  ++ +     G  +V +G   ++    +L +I +   +    +  I     + 
Sbjct: 1292 VETIQQETNEVVTAMETGTSQVVEGTQLVEATKKSLEEIVQVSQQIDQLVQAISQATVSQ 1351

Query: 665  SENTEGALKNAQEIAALSEEFTATAEEVTAS-------TEELNSIIEEIRGIAEE 712
            S+ +       +E+A  SEE + T+  ++AS        ++L S ++  R  AEE
Sbjct: 1352 SQTSNVVTNLMEEMAGFSEEISDTSRHISASLQATVAVAQKLKSSVDTFRVGAEE 1406



 Score = 45.1 bits (105), Expect = 3e-08
 Identities = 68/300 (22%), Positives = 124/300 (41%), Gaps = 33/300 (11%)

Query: 441  EDELKGAEETATQVAEAAT-----QVAEAASDQSAKL-QESSEELENTYEGAKEVYSAAE 494
            + E+    + ATQ+  A       Q AE A D++ +L QE  +  E       ++ S  E
Sbjct: 1029 QSEIDLFSQLATQIGLALARADFLQQAETARDRAEQLAQEQQQRTEAIQAELIQLLSDVE 1088

Query: 495  ETVKSSEEIKENSETGVEKVENAISRMQSITN-VIDELGKSIKMLGEDGKKINEVTGLIK 553
            +  +    ++ +   G       IS +  I N +I+ L   +  +    +K+N  T L  
Sbjct: 1089 DASRGDLTVRADISAG------EISTVADIFNSLIESLRAVVVQVKASTQKVN--TSLDS 1140

Query: 554  DIAEQTGLLALNASIEAAR-------AGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIE 606
            D A     LA ++  +A +         +  K    V++     AE  +KS    + T  
Sbjct: 1141 D-ANSMQRLAADSQSQAEKIKKTLNAVAEMSKSILDVSNTANQAAEVARKS----SQTAI 1195

Query: 607  GVNKRIDDTIDLGLKGKD---EVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQN 663
               + +D+T+   L  ++   E  K V  + E +  + K+   +N+ A++ N +   A N
Sbjct: 1196 SSGQTMDETVRSILHLRETVAETAKKVKRLGESSQQISKVISLINQIALQTNLL---AIN 1252

Query: 664  ASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTKK 723
            AS     A +  +  A ++EE    A     +T+E+  I+E I+    EV    E  T +
Sbjct: 1253 ASIEAARAGEEGRGFAVVAEEVGQLATRSANATKEIEQIVETIQQETNEVVTAMETGTSQ 1312