Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 495 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  126 bits (317), Expect = 2e-33
 Identities = 79/292 (27%), Positives = 148/292 (50%), Gaps = 7/292 (2%)

Query: 425 ELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYE 484
           E+       N  I+++   +   +ETA Q+ E A  +   +   + ++QE  +E E    
Sbjct: 198 EIGRLASAFNAFIEQIHATVTKVQETAAQLIEGAGTLGSLSGANNLRVQEQRQETEAAVT 257

Query: 485 GAKEVYSAAEETVKSS---EEIKENSETGVEKVENAISRMQSITN-VIDELGK---SIKM 537
              ++ ++A E   ++    E    ++  V++ +    +   +T  ++DEL +   S++ 
Sbjct: 258 AVSQLSASAAEVAGNALRTSEAAAEADAQVDESQRRFDQSLGLTRQLVDELSRCAISVQQ 317

Query: 538 LGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKS 597
           L ++ +KI+EV  +I  IAEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA   +++
Sbjct: 318 LQQETQKIDEVVVVINSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQA 377

Query: 598 VEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGI 657
             +I   I+ V  R++DT+ +    +   DK +   +E+   L  +   V+        +
Sbjct: 378 TGEIQKMIQQVQTRVNDTVTVMGASQQLSDKSLSQAEEIKSMLASVTRLVSNINAMNTEV 437

Query: 658 KHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGI 709
            H A   +  TE   ++  ++A +S   +A +  +  S E L    E +R +
Sbjct: 438 AHAASEQTSVTENISRSLNDLAGISGSASADSASLAQSGERLFQQGERLRAL 489



 Score = 39.3 bits (90), Expect = 5e-07
 Identities = 66/379 (17%), Positives = 143/379 (37%), Gaps = 51/379 (13%)

Query: 268 DGNVVGIIFTGIPKAPFVAVITDTRNEIIIISLLGLLLSILIALYTGRKIT-KPIEELKK 326
           +G   G +     +AP  A ++     ++    L LLLS+++ +   +K+   P+  +  
Sbjct: 116 NGKPTGKMEVTFTRAPIEARLSSLLLGLLAQGALILLLSMVVIVIILKKLVITPLAHVVS 175

Query: 327 GTEEFGNGNYDY--KTTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKVEL---ATLLT 381
             E+  +G+ D   +  V++ DE+  L+ +FN   E +   +  +     +L   A  L 
Sbjct: 176 AMEDVASGDGDLTRRLPVESQDEIGRLASAFNAFIEQIHATVTKVQETAAQLIEGAGTLG 235

Query: 382 NVSDVMNR-------------VAKGDFTARADESRENN-NLEKAINTAVSNVAD------ 421
           ++S   N               A    +A A E   N     +A   A + V +      
Sbjct: 236 SLSGANNLRVQEQRQETEAAVTAVSQLSASAAEVAGNALRTSEAAAEADAQVDESQRRFD 295

Query: 422 ----LIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSE 477
               L ++L +E+    I +Q+++ E +  +E    +   A Q    A + + +   + E
Sbjct: 296 QSLGLTRQLVDELSRCAISVQQLQQETQKIDEVVVVINSIAEQTNLLALNAAIEAARAGE 355

Query: 478 ELENTYEGAKEVYSAAEETVKSSEEIKEN---------------------SETGVEKVEN 516
           +       A EV + A  T +++ EI++                      S+  + + E 
Sbjct: 356 QGRGFAVVADEVRTLASRTQQATGEIQKMIQQVQTRVNDTVTVMGASQQLSDKSLSQAEE 415

Query: 517 AISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDA 576
             S + S+T ++  +      +     +   VT  I         ++ +AS ++A    +
Sbjct: 416 IKSMLASVTRLVSNINAMNTEVAHAASEQTSVTENISRSLNDLAGISGSASADSASLAQS 475

Query: 577 GKGFAVVASEIKSLAEEIK 595
           G+        +++L    +
Sbjct: 476 GERLFQQGERLRALVNSFR 494