Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 546 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  129 bits (325), Expect = 3e-34
 Identities = 90/330 (27%), Positives = 160/330 (48%), Gaps = 21/330 (6%)

Query: 375 ELATLLTNVSDVMNRVAKGDFTARADESR--ENNNLEKAINTAVSNVADLIKELREEVEL 432
           +L T++  +SD      +GD   R D+S   E + L +  N  +  +  LI  ++ +   
Sbjct: 223 QLDTMIAAISD-----GEGDLRGRLDDSGRDELSLLARTFNGLMMKLQQLIGTIKSDAVS 277

Query: 433 LNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSA 492
           L+ ++  +    K +E+ +T+      Q+A A    S  + E +   +N          A
Sbjct: 278 LDARVTGLNHSAKESEKISTEQNANLEQIATAVHQLSHAVHEVASSSQN----------A 327

Query: 493 AEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLI 552
             +T  ++  IKE++      V  ++ R+Q +  V+    + I+ L  + K+I  V  +I
Sbjct: 328 LSDTEHANNLIKESNAV----VGQSVERVQQLAGVVSHASEVIQNLASESKQIVTVLDVI 383

Query: 553 KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRI 612
           + IAEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA   ++S EDI   + G+   +
Sbjct: 384 RGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTEDIQRMVAGLESGV 443

Query: 613 DDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGAL 672
            + +     G  +VD  V A   +  AL ++ E+V+ +   I  I    +  S+  +   
Sbjct: 444 SEAVSAIDSGTRQVDSVVDASGSITKALAEVDEAVSRTKDLIYLIATATEQQSKVVDEVN 503

Query: 673 KNAQEIAALSEEFTATAEEVTASTEELNSI 702
           +N   +  LS+E          + +E+  I
Sbjct: 504 QNISSLNLLSQESIGVVRRTREAADEIAQI 533



 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 35/301 (11%)

Query: 293 NEIIIISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTG--DELQE 350
           N +  I +L +L SI+  +Y  R +T  +E+L        +G  D +  +     DEL  
Sbjct: 193 NLLFGIIILVILASIVSVVYGPRLVTSRVEQLDTMIAAISDGEGDLRGRLDDSGRDELSL 252

Query: 351 LSDSFNKMAENVKNLMKTMDMDKV----------------------------ELATLLTN 382
           L+ +FN +   ++ L+ T+  D V                            ++AT +  
Sbjct: 253 LARTFNGLMMKLQQLIGTIKSDAVSLDARVTGLNHSAKESEKISTEQNANLEQIATAVHQ 312

Query: 383 VSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVED 442
           +S  ++ VA     A +D +   NNL K  N  V    + +++L   V   +  IQ +  
Sbjct: 313 LSHAVHEVASSSQNALSD-TEHANNLIKESNAVVGQSVERVQQLAGVVSHASEVIQNLAS 371

Query: 443 ELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEE 502
           E K        +   A Q    A + + +   + E+       A EV + A  T +S+E+
Sbjct: 372 ESKQIVTVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTED 431

Query: 503 IKE---NSETGVEKVENAI-SRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQ 558
           I+      E+GV +  +AI S  + + +V+D  G   K L E  + ++    LI  IA  
Sbjct: 432 IQRMVAGLESGVSEAVSAIDSGTRQVDSVVDASGSITKALAEVDEAVSRTKDLIYLIATA 491

Query: 559 T 559
           T
Sbjct: 492 T 492



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 17/132 (12%), Positives = 63/132 (47%)

Query: 586 EIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKE 645
           +++ L   IK     ++  + G+N    ++  +  +    +++   A+ +++ A+ ++  
Sbjct: 263 KLQQLIGTIKSDAVSLDARVTGLNHSAKESEKISTEQNANLEQIATAVHQLSHAVHEVAS 322

Query: 646 SVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEE 705
           S   +        +  + ++     +++  Q++A +    +   + + + ++++ ++++ 
Sbjct: 323 SSQNALSDTEHANNLIKESNAVVGQSVERVQQLAGVVSHASEVIQNLASESKQIVTVLDV 382

Query: 706 IRGIAEEVTQVA 717
           IRGIAE+   +A
Sbjct: 383 IRGIAEQTNLLA 394