Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 729 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  123 bits (308), Expect = 4e-32
 Identities = 106/359 (29%), Positives = 177/359 (49%), Gaps = 48/359 (13%)

Query: 380 LTNVSDVMNRVAKGDF-TARADESRENNNLEKAINTAVSNVADLIKELRE---------- 428
           L  ++  M+R+A GD  TA  D+   N+ + +   T V+   D  +E RE          
Sbjct: 387 LLRLATAMDRIAGGDLDTAIPDQG--NDEISQMART-VAVFRDTAREAREAERRVAEERE 443

Query: 429 ---------EVELLNIQIQKVED---ELKGAEETATQVAEAATQVAEAASDQSAKLQESS 476
                    E+ L +   Q V     +L GA +TA + A+   Q+A A  D++  + ++S
Sbjct: 444 RAARLKREGELSLADAFDQSVGQTVQDLGGAAQTAAERADTMDQLARAVMDENRGVAQTS 503

Query: 477 EELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIK 536
           EE+    +    V +A EE   + EEI   +    E   +A+   +++  V+D L     
Sbjct: 504 EEMSGQTQA---VAAAVEELDSAIEEILRQTTGSSEVSGSAVREAEAMRAVMDSLN---- 556

Query: 537 MLGEDGK-KINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIK 595
               DG  +I E+ GLI+ +A QT LLA+NA+IEAA AG+AGKGFAVVASE+K+LA +  
Sbjct: 557 ----DGSGRIGEIIGLIEQVAAQTNLLAMNATIEAAHAGNAGKGFAVVASEVKNLAHQSS 612

Query: 596 KSVEDINHTIEGVNKRIDDTIDLG------LKGKDEVDKGVI-AIDEVNDALLKIKESVN 648
           +S +DI   I  +   +++ +         ++  DE+  G+  ++++ + A  +I  +V 
Sbjct: 613 QSADDIRKQIAKIRADVENAVSATGRLTDIIRRNDEIVAGIASSVEQQSAATREISRNVQ 672

Query: 649 ESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIR 707
             A  +  I       S+ +E + K A E+ A S+   A   +V   T E++S +  IR
Sbjct: 673 MVAEGVRHISSSVTLVSDVSERSGKAAAEVLAASQ---AMRGQVGVITGEIDSFLSGIR 728



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 81/452 (17%), Positives = 174/452 (38%), Gaps = 89/452 (19%)

Query: 342 VKTGDELQELSD----SFNKMAENVKNLMKTMDMDKV-----ELATLLTNVSDVMNRVAK 392
           V++ DE + + D    S   + + + +L   +D  ++     + A  +    D +N +A+
Sbjct: 85  VRSDDERKRIFDDLRGSHQALDQRITDLAARVDRPEIIAGLRKTAEEMRTTLDRLNGIAQ 144

Query: 393 ---GDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVED--ELKGA 447
              G      ++++    LE     A   +A   K     +E++ +  +K+ +  EL  A
Sbjct: 145 SMLGTEAVMIEDTKTIRGLETGFAAAARKLAGSAK-----IEVV-LGARKLANMIELLQA 198

Query: 448 EETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENS 507
           ++T T  AE A    +A     A L+ S++ + +    A+   +   ET+ S E      
Sbjct: 199 DQTVTGAAEVAKAGEQATQAFEASLRISADAVRSLSILAQAQRAPDLETLSSLESA---F 255

Query: 508 ETGVEKVENAISRMQSITNVIDELGK------SIKMLGEDGKKI--------------NE 547
           ++G+  V + +SR++S     D+L +         MLG++   +              N+
Sbjct: 256 KSGMASVSSQLSRLKSANVDADQLAQLQRLFDDTMMLGDEMPSLFDRRASALTQVGMAND 315

Query: 548 VTGLIKDIAEQTGLLALN------------ASIEAARAGD------AGKGFAVVASEIKS 589
           +    + IAE+ G+L  N              I  ARA        +  G AV+ + +  
Sbjct: 316 LVEESRAIAERLGILVNNLVGAVDGDIATTVEISEARAKTTVIIQWSVAGLAVLITVLIG 375

Query: 590 LAEEIKKSVEDINHTIEGVNKRIDDTIDLGL--KGKDEVDKGVIAIDEVNDALLKIKESV 647
                K+ +  +      +++     +D  +  +G DE+ +    +    D   + +E+ 
Sbjct: 376 WWYVGKRIIGRLLRLATAMDRIAGGDLDTAIPDQGNDEISQMARTVAVFRDTAREAREAE 435

Query: 648 NESAVK--------------------------INGIKHGAQNASENTEGALKNAQEIAAL 681
              A +                          +  +   AQ A+E  +   + A+ +   
Sbjct: 436 RRVAEERERAARLKREGELSLADAFDQSVGQTVQDLGGAAQTAAERADTMDQLARAVMDE 495

Query: 682 SEEFTATAEEVTASTEELNSIIEEIRGIAEEV 713
           +     T+EE++  T+ + + +EE+    EE+
Sbjct: 496 NRGVAQTSEEMSGQTQAVAAAVEELDSAIEEI 527