Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 565 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  131 bits (329), Expect = 1e-34
 Identities = 114/417 (27%), Positives = 186/417 (44%), Gaps = 61/417 (14%)

Query: 297 IISLLGLLLSIL---IALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTG-DELQELS 352
           +I L+ L+ +++   + L   R ITKP++ + +G +   + +Y     +     E+  ++
Sbjct: 193 LIGLMALVAALILGGVGLIIARGITKPLKTVVEGLDGLADRDYRRSLDIPASRSEVGRIA 252

Query: 353 DSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAI 412
            +F +                  L  LL   ++   R    + T +A  +R+   L  A 
Sbjct: 253 SAFER------------------LRGLLLEAAE--ERRQNAERTEQAALARKEEMLALA- 291

Query: 413 NTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKL 472
           +   + + DL+  L    E L +    +     GAEET +Q    A+ V  AAS+ S   
Sbjct: 292 SRFENQIGDLVNGLGSASEALRVSASTMSS---GAEETLSQ----ASTVTAAASESS--- 341

Query: 473 QESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELG 532
                      E  + V +A EE   S +EI   +         A+ R       +DE  
Sbjct: 342 -----------ENTQTVAAATEELASSIQEISRQASHSNAMARTAVER-------VDETN 383

Query: 533 KSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAE 592
           K++  L     ++ +V  LI DIA QT LLALNA+IEAARAG+AGKGFAVVA E+KSLA+
Sbjct: 384 KTVAALNSAALRVGDVVALITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKSLAQ 443

Query: 593 EIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAV 652
           +  K+ EDI+  IE +      T+    +    + + +  + EV   +    E  N +  
Sbjct: 444 QTAKATEDISRQIEDIQSVTTSTV----QAISAIGESINGLSEVAGMIAAAVEEQNAATK 499

Query: 653 KINGIKHGAQNASENTEGALKNAQEIAALSEEFTA----TAEEVTASTEELNSIIEE 705
           +I+     A+ AS    GA+    E A    E  A     AE++    +ELN+ + +
Sbjct: 500 EISMNIQRAEGASREVSGAISLVSEAARSGGETAADVLGAAEDLFHRNKELNTAVSD 556



 Score = 33.5 bits (75), Expect = 3e-05
 Identities = 35/195 (17%), Positives = 77/195 (39%), Gaps = 14/195 (7%)

Query: 543 KKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDIN 602
           K +  V   +  +A++    +L+     +  G     F  +   +   AEE +++ E   
Sbjct: 218 KPLKTVVEGLDGLADRDYRRSLDIPASRSEVGRIASAFERLRGLLLEAAEERRQNAE--- 274

Query: 603 HTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALL----KIKESVNESAVKINGIK 658
            T +    R ++ + L  + ++++   V  +   ++AL      +     E+  + + + 
Sbjct: 275 RTEQAALARKEEMLALASRFENQIGDLVNGLGSASEALRVSASTMSSGAEETLSQASTVT 334

Query: 659 HGAQNASENTEGALKNAQEIAALSEEFT-------ATAEEVTASTEELNSIIEEIRGIAE 711
             A  +SENT+      +E+A+  +E +       A A       +E N  +  +   A 
Sbjct: 335 AAASESSENTQTVAAATEELASSIQEISRQASHSNAMARTAVERVDETNKTVAALNSAAL 394

Query: 712 EVTQVAERVTKKSSQ 726
            V  V   +T  +SQ
Sbjct: 395 RVGDVVALITDIASQ 409



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 43/202 (21%)

Query: 555 IAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDD 614
           IA Q  L+ L A + A   G  G   A      + + + +K  VE ++   +   +R   
Sbjct: 187 IASQARLIGLMALVAALILGGVGLIIA------RGITKPLKTVVEGLDGLADRDYRR--- 237

Query: 615 TIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVK--------------------- 653
           ++D+    + EV +   A + +   LL+  E   ++A +                     
Sbjct: 238 SLDIPAS-RSEVGRIASAFERLRGLLLEAAEERRQNAERTEQAALARKEEMLALASRFEN 296

Query: 654 -----INGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEE-------VTASTEELNS 701
                +NG+   ++    +       A+E  + +   TA A E       V A+TEEL S
Sbjct: 297 QIGDLVNGLGSASEALRVSASTMSSGAEETLSQASTVTAAASESSENTQTVAAATEELAS 356

Query: 702 IIEEIRGIAEEVTQVAERVTKK 723
            I+EI   A     +A    ++
Sbjct: 357 SIQEISRQASHSNAMARTAVER 378