Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 562 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  121 bits (304), Expect = 8e-32
 Identities = 110/432 (25%), Positives = 182/432 (42%), Gaps = 57/432 (13%)

Query: 278 GIPKAPFVAVITDTRNEIIIISLLGLLLSILI--ALYTGRKITKPIEELKKGTEEFGNGN 335
           G  KA   A  +D+  +++II++  ++L +++   L     I KPI  +         G 
Sbjct: 174 GAKKAAEEAYQSDSDAQVLIITVTVVILGLVVFFTLLLRAAIAKPIVSITTIMRRLAEG- 232

Query: 336 YDYKTTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDF 395
            +    +   D   E+ D    +     N ++   ++  + A                  
Sbjct: 233 -ERTIDIPARDRKDEIGDMAGAVEVFKDNAIRAEQLENEQRAE----------------- 274

Query: 396 TARADESRENNNLEKAINT---AVSNVADLIKELREEVELLNIQIQKVEDELKGAEETAT 452
             RA+  + +  +E  + T   AV NV  ++     E+E                     
Sbjct: 275 --RANREKRSQTIETLMGTFDRAVGNVLAVVAGAATEME--------------------- 311

Query: 453 QVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVE 512
             A+A T  AE  S Q+  +  ++EE      G + V SA+EE   S  EI    E    
Sbjct: 312 STAQAMTSNAEQTSRQAIAVSSATEEAS---AGVQTVASASEELAASISEIGRQVEQS-- 366

Query: 513 KVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAAR 572
              NA SR+ S          ++  L E   +I  V GLI  IA QT LLALNA+IEAAR
Sbjct: 367 ---NAASRLAS--EEAARASVTVSGLAETSTRIGTVVGLITHIANQTNLLALNATIEAAR 421

Query: 573 AGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIA 632
           AGDAGKGFAVVA E+KSLA +  K+ E+I+  I  V +     ++        +++    
Sbjct: 422 AGDAGKGFAVVAGEVKSLANQTAKATEEISAQIGAVQQATQQAVEAIATIVRRIEETTHI 481

Query: 633 IDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEV 692
              +  A+ +   + NE A  +  +  G Q  S +  G  + A E    +++  + A+ +
Sbjct: 482 STAIASAVEEQAAATNEIAQNVQRVAAGTQEVSASIGGVTQAADETGGAAQQVLSAAQSL 541

Query: 693 TASTEELNSIIE 704
           +  + EL  +++
Sbjct: 542 SRESAELKEMVD 553



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 377 ATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQ 436
           A +   V  + N+ AK    A  + S +   +++A   AV  +A +++ + E   +    
Sbjct: 430 AVVAGEVKSLANQTAK----ATEEISAQIGAVQQATQQAVEAIATIVRRIEETTHISTAI 485

Query: 437 IQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEET 496
              VE++     E    +A+   +VA    + SA +   ++  + T   A++V SAA+  
Sbjct: 486 ASAVEEQAAATNE----IAQNVQRVAAGTQEVSASIGGVTQAADETGGAAQQVLSAAQSL 541

Query: 497 VKSSEEIKENSETGVEKVENA 517
            + S E+KE  +  +  V +A
Sbjct: 542 SRESAELKEMVDHFLRDVRSA 562



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 63/346 (18%), Positives = 128/346 (36%), Gaps = 58/346 (16%)

Query: 415 AVSNVADLIKE--LREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKL 472
           AVS   ++I E  L     L  +++Q +E   +  E +     +A    AE   ++  K 
Sbjct: 37  AVSGATEIIVENWLPSIRALAALELQVIEH--RRFEMSHIMTTDAPGMAAE--DERIRKQ 92

Query: 473 QESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELG 532
           +E   + + TYE  K + SA E  +      +  +   + +    +SR    T   D   
Sbjct: 93  RELIAKTQATYE--KLINSAEERAIYDRFATQWTTYLALTEQVIELSRTNKNTEARD--- 147

Query: 533 KSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEI----- 587
                LGE     N++   + +  +     A  A+ EA ++    +   +  + +     
Sbjct: 148 ---MQLGESRAAFNQMRAALVEAIDLNNKGAKKAAEEAYQSDSDAQVLIITVTVVILGLV 204

Query: 588 --------KSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKG-KDEVDKGVIAIDEVND 638
                    ++A+ I      +    EG     + TID+  +  KDE+     A++   D
Sbjct: 205 VFFTLLLRAAIAKPIVSITTIMRRLAEG-----ERTIDIPARDRKDEIGDMAGAVEVFKD 259

Query: 639 ALLKIKESVNESAVK------------------------INGIKHGAQNASENTEGAL-K 673
             ++ ++  NE   +                        +  +  GA    E+T  A+  
Sbjct: 260 NAIRAEQLENEQRAERANREKRSQTIETLMGTFDRAVGNVLAVVAGAATEMESTAQAMTS 319

Query: 674 NAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAER 719
           NA++ +  +   ++  EE +A  + + S  EE+     E+ +  E+
Sbjct: 320 NAEQTSRQAIAVSSATEEASAGVQTVASASEELAASISEIGRQVEQ 365