Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  124 bits (312), Expect = 1e-32
 Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 24/327 (7%)

Query: 383 VSDVMNRV-AKGDFTARADESRENN--NLEKAINTAVSNVADLIKELREEVELLNIQIQK 439
           +SD ++R+ A  D T R D   ++    + +  N+ V +   LI+E+   VE++N   Q+
Sbjct: 299 ISDAISRIEATKDLTLRCDTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQE 358

Query: 440 VEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKS 499
           + +    A E   +       VA A ++  A + E +   E   E A   +         
Sbjct: 359 LSENSMRASEGVGRQLNETDMVATAITEMGATIDEIASNTELAAERAGNTH--------- 409

Query: 500 SEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQT 559
                +N++ G   VE+ I ++Q++   + +  + +  L +D + I  V  +I+ IAEQT
Sbjct: 410 -----DNAQQGQVGVEHTIEKIQALAAQLTDSAQVVSELEKDSETIGSVLDVIRGIAEQT 464

Query: 560 GLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDL- 618
            LLALNA+IEAARAG+ G+GFAVVA E++SLA   ++S E+I   I+ +  R    + L 
Sbjct: 465 NLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEIAGIIQTLQSRTRSIVQLM 524

Query: 619 ------GLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGAL 672
                 G++  D+       ++++N  +  I +   + A  I      A   ++N     
Sbjct: 525 EATQRQGIESADQAASAGALLEQINADVTNIMDMSTQIAAAIEEQSMVASEVNKNVVVIR 584

Query: 673 KNAQEIAALSEEFTATAEEVTASTEEL 699
             A E A  ++E    +++V A T+ L
Sbjct: 585 DIAAESAQAADENAKASDDVKARTQVL 611



 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 67/341 (19%), Positives = 140/341 (41%), Gaps = 30/341 (8%)

Query: 406 NNLEKAINTAVSNVADLIKELRE-EVELLNIQIQKVE------------DELKGAEETAT 452
           + L  A+ +AV NV  L+KE  E E+ +  +Q+++ E            D+ KG      
Sbjct: 129 DGLYGALRSAVHNVETLVKEKNEPELMVTMLQLRRNEKDFMLRRAMSYLDKFKGNLALLR 188

Query: 453 QVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEV--------YSAAEETVKSSE--- 501
           Q    A        + +A + +  +  +      +E+         ++  +++ S+E   
Sbjct: 189 QQVSGAMLSDSVKGELNALIDDYEKNFKALVSKEQELGLDKDSGSMASLRDSISSAEKSL 248

Query: 502 -EIKENSETGVEKVENAISRMQSITNVIDEL---GKSIKMLGEDGKKINEVTGLIKDIAE 557
            ++K  S   +   E+A   +  +  ++  L   G ++ ++    + +  ++  I  I E
Sbjct: 249 VQLKAQSMDAISDAESATVTISIVVFILITLVLIGFTLAIIRSIMEPVQRISDAISRI-E 307

Query: 558 QTGLLALNASIEAA-RAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTI 616
            T  L L    +     G   + F  +    +SL  E+  SVE +NH+ + +++      
Sbjct: 308 ATKDLTLRCDTKVDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRAS 367

Query: 617 DLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQ 676
           +   +  +E D    AI E+   + +I  +   +A +       AQ      E  ++  Q
Sbjct: 368 EGVGRQLNETDMVATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQ 427

Query: 677 EIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVA 717
            +AA   +      E+   +E + S+++ IRGIAE+   +A
Sbjct: 428 ALAAQLTDSAQVVSELEKDSETIGSVLDVIRGIAEQTNLLA 468