Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 662 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  124 bits (310), Expect = 2e-32
 Identities = 112/443 (25%), Positives = 201/443 (45%), Gaps = 103/443 (23%)

Query: 287 VITDTRN----------EIIIISLLGLLLSILIALYTGRKITKPIEEL-KKGTEEFGNGN 335
           ++TDTR+           +I++ L+  L+ IL++L+ GR +   +  L  K TE   + +
Sbjct: 295 LLTDTRSALANAKSLMVSVIVLMLVSGLVVILLSLFIGRYLHASLRHLYHKVTESQKHYD 354

Query: 336 YDYKTTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDF 395
              +  +K  DE+ +L  +FN M           D +KV +  + TN   ++        
Sbjct: 355 LSVRVDLKGKDEIGQLGSAFNHM---------MADFEKV-IGMVRTNTQGLL-------- 396

Query: 396 TARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVA 455
                             TA   +    + +RE+V L + ++ +V   +     T  ++A
Sbjct: 397 ------------------TASQEMEGCARIMREDVALGHSEVDQVASAMTEMSATVQEIA 438

Query: 456 EAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVE 515
           + A Q +EA++  + + +E S E+E T +   E+   A+E                    
Sbjct: 439 QNAVQASEASAQANKEAKEGSLEVERTADSINEL---AQE-------------------- 475

Query: 516 NAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGD 575
                       I +  ++I  L ED K I +V G+I  IAEQT LLALNA+IEAARAG+
Sbjct: 476 ------------IADAAQAINNLDEDIKGIVDVLGVISGIAEQTNLLALNAAIEAARAGE 523

Query: 576 AGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDE 635
            G+GFAVVA E++SLA+  + S EDI    E + +     +     G+++ +  V+    
Sbjct: 524 MGRGFAVVADEVRSLAQRAQTSTEDIRSMTERLERGAKIAVKAMESGRNKAEISVVESKR 583

Query: 636 VNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTAS 695
             + L++I   V+E +V I+ +                  ++IAA + E +A +EEV  +
Sbjct: 584 AGEELIRI---VSEVSV-IDSMN-----------------EQIAAATHEQSAVSEEVNQN 622

Query: 696 TEELNSIIEEIRGIAEEVTQVAE 718
             +++ I      +++ ++Q+ E
Sbjct: 623 AMKISDIYRNTHEVSDRLSQLNE 645



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 10/130 (7%)

Query: 597 SVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKING 656
           S+  + H +    K  D ++ + LKGKDE+ +   A + +     K+   V  +      
Sbjct: 338 SLRHLYHKVTESQKHYDLSVRVDLKGKDEIGQLGSAFNHMMADFEKVIGMVRTNT----- 392

Query: 657 IKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQV 716
              G   AS+  EG  +  +E  AL     +  ++V ++  E+++ ++EI   A + ++ 
Sbjct: 393 --QGLLTASQEMEGCARIMREDVALGH---SEVDQVASAMTEMSATVQEIAQNAVQASEA 447

Query: 717 AERVTKKSSQ 726
           + +  K++ +
Sbjct: 448 SAQANKEAKE 457



 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 33/201 (16%), Positives = 86/201 (42%), Gaps = 17/201 (8%)

Query: 528 IDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEI 587
           I +LG +   +  D +K   V G+++   +  GLL  +  +E   A    +  A+  SE+
Sbjct: 367 IGQLGSAFNHMMADFEK---VIGMVRTNTQ--GLLTASQEMEGC-ARIMREDVALGHSEV 420

Query: 588 KSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESV 647
               +++  ++ +++ T++ + +      +   +   E  +G + ++   D++ ++ + +
Sbjct: 421 ----DQVASAMTEMSATVQEIAQNAVQASEASAQANKEAKEGSLEVERTADSINELAQEI 476

Query: 648 NESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIR 707
            ++A  IN       N  E+ +G +     I+ ++E+    A            +     
Sbjct: 477 ADAAQAIN-------NLDEDIKGIVDVLGVISGIAEQTNLLALNAAIEAARAGEMGRGFA 529

Query: 708 GIAEEVTQVAERVTKKSSQFK 728
            +A+EV  +A+R    +   +
Sbjct: 530 VVADEVRSLAQRAQTSTEDIR 550