Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  164 bits (414), Expect = 2e-44
 Identities = 143/562 (25%), Positives = 266/562 (47%), Gaps = 53/562 (9%)

Query: 189 VNNDDYWVDSLKERTGNEATIFLKN----VRISTTVQ-TNGQDATGTKCSDEV--YNIIT 241
           +N     VD     TG  AT+F+++    +RIST+++  +G+ A GT    +   Y  + 
Sbjct: 108 INASKSKVDRYSNLTGGNATVFVRDGDDFIRISTSLKKADGKRALGTYLGKKHPGYGALM 167

Query: 242 NHQDYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIPKAPFVAVITDTRNEIII---- 297
             ++Y G A + G +Y+T Y PI    G+++GI++ G   +  +  +  + N++ +    
Sbjct: 168 AGKEYEGYARLFGKDYMTVYRPITGPQGDIIGILYIGFDISEALTELQRSMNQLKLEESG 227

Query: 298 -ISLLGLLLSILIAL---YTGRKITKPI------EELKKGTEE--FGNGN----YDYKTT 341
             +L+  + + +IA     +G  +T+ I      +  K+G +E  + N N    Y Y  T
Sbjct: 228 YFTLIRNVDNAIIAQPNQESGTILTEAILDGLSLDAAKRGGQESEYLNSNKEPMYAYAVT 287

Query: 342 VKTGD-------ELQELSD------SFNKMAENVKNLMKTMDMDKVELATL--LTNVSDV 386
           +           + +EL++      S N     V  L+ T+ +  V + TL  L ++   
Sbjct: 288 IPGWQWTLLGQAKKRELNEESLKLLSINAGVAAVGVLLITLLLSMVLIKTLRPLRHLQHQ 347

Query: 387 MNRVAKGDFTARADE-SRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELK 445
           +  + KGD T   D+ S + +N    I  A   +A     LRE V  L   +  +E++  
Sbjct: 348 LTELGKGDLTQEFDQVSPDTDNEVDRITHAARQMA---LSLRELVGALRASVNTLEEQAS 404

Query: 446 GAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKE 505
            A+E A    E A Q+       +  ++E S  +       ++V + A E    S+++  
Sbjct: 405 SAQEVARLNGEEAQQLMAQTDQIATAIEEMSTSV-------RDVANHASEGASQSQQVDN 457

Query: 506 NSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALN 565
            S  G ++++  +  +  ++  +D    S++ + ++ + I++VT +I  IAEQT LLALN
Sbjct: 458 ASRDGHQQLDQLVQGLGKLSEQLDASHMSVENVSKESEAISQVTEVINSIAEQTNLLALN 517

Query: 566 ASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDE 625
           A+IEAARAG+ G+GFAVVA E+++LA+  + S+ +I+ TI  + ++I  T +   +    
Sbjct: 518 AAIEAARAGEQGRGFAVVADEVRTLAQRTQTSISEISQTITQLQQQIKLTAEQMGQSHQL 577

Query: 626 VDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEF 685
                    E    L +I  S+ E A+  + I    +  S   +   +N  EI  L+ + 
Sbjct: 578 GTASAAQGQEAATNLNQITISIGELAIASSSIASATEQQSAVADEITRNLHEITELARDG 637

Query: 686 TATAEEVTASTEELNSIIEEIR 707
              A +   + + L+ I  EI+
Sbjct: 638 EQRAGDTVDAAQNLSHIAAEIK 659