Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  119 bits (299), Expect = 4e-31
 Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 60/353 (16%)

Query: 375 ELATLLTNVSDVMNRVAKGDFTARADESR--ENNNLEKAINTAVSNVADLIKELREEVEL 432
           ELA +L ++ +      +GD + R D+SR  E  ++  + N  V+ ++  ++ +      
Sbjct: 317 ELADMLKSIGE-----GEGDLSLRLDDSRQDETGSMAASYNQFVTYLSKTLQSVSATAND 371

Query: 433 LNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSA 492
           L   +++++++ K  E                 +DQ +K+++ +  +      A+E+ S+
Sbjct: 372 LFQAVERIDNQAKHMEHEI--------------NDQVSKIEQVATAIHEMGMTAQEIASS 417

Query: 493 AEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLI 552
           A    ++++   ++   G + V+N I+ + S++  +    +++  L ED   I+ V  +I
Sbjct: 418 ANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTVLEVI 477

Query: 553 KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRI 612
           + ++EQT LLALNA+IEAARAG+ G+GFAVVA E+++LA     S EDI H IE +  + 
Sbjct: 478 RGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQAKT 537

Query: 613 DDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGAL 672
            + ++                         I +S N+S       +   Q AS + E   
Sbjct: 538 TEVVN------------------------AIGQSTNQS-------QQSQQEASLSGEHLH 566

Query: 673 KNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTKKSS 725
             A+ I A+SE     + ++  +TEE ++++ EI      VT +A+ +++ SS
Sbjct: 567 SIAENIQAMSE----MSMQIATATEEQSNVVGEIN---PHVTAIAD-ISRSSS 611



 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 48/275 (17%), Positives = 106/275 (38%), Gaps = 39/275 (14%)

Query: 453 QVAEAATQVAEAASDQSAKLQESSEELENTYEGA-KEVYSAAEETVKSSEEIKENSETGV 511
           ++A+    + E   D S +L +S ++   +   +  +  +   +T++S      +    V
Sbjct: 317 ELADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFVTYLSKTLQSVSATANDLFQAV 376

Query: 512 EKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAA 571
           E+++N    M+       E+   +  + +    I+E+    ++IA      A NA +   
Sbjct: 377 ERIDNQAKHMEH------EINDQVSKIEQVATAIHEMGMTAQEIASSANNAAENAQVADQ 430

Query: 572 RAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVI 631
                 +      + + S++E++  + E ++   E  +                      
Sbjct: 431 SVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDAS---------------------- 468

Query: 632 AIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEE 691
           +ID V + +  + E  N  A+          NA+     A +  +  A +++E    A  
Sbjct: 469 SIDTVLEVIRGVSEQTNLLAL----------NAAIEAARAGEQGRGFAVVADEVRTLASR 518

Query: 692 VTASTEELNSIIEEIRGIAEEVTQVAERVTKKSSQ 726
             ASTE++  IIE+++    EV     + T +S Q
Sbjct: 519 SHASTEDIRHIIEKLQAKTTEVVNAIGQSTNQSQQ 553



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 39/227 (17%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 345 GDELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRE 404
           G   QE++ S N  AEN +   ++++     +   + +V+ +  ++     T        
Sbjct: 408 GMTAQEIASSANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETV------- 460

Query: 405 NNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEA 464
           +   E A  +++  V ++I+ + E+  LL +       E   A E     A  A +V   
Sbjct: 461 SQLAEDA--SSIDTVLEVIRGVSEQTNLLALN---AAIEAARAGEQGRGFAVVADEVRTL 515

Query: 465 ASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSI 524
           AS   A  ++    +E       EV +A  ++   S++ ++ +    E + +    +Q++
Sbjct: 516 ASRSHASTEDIRHIIEKLQAKTTEVVNAIGQSTNQSQQSQQEASLSGEHLHSIAENIQAM 575

Query: 525 TNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAA 571
           + +  ++  + +       +IN     I DI+  +  +    S++ +
Sbjct: 576 SEMSMQIATATEEQSNVVGEINPHVTAIADISRSSSDVVRQTSLDCS 622