Pairwise Alignments
Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Subject, 698 a.a., PAS domain S-box from Dechlorosoma suillum PS
Score = 130 bits (326), Expect = 3e-34
Identities = 94/329 (28%), Positives = 158/329 (48%), Gaps = 20/329 (6%)
Query: 385 DVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDEL 444
D +A+GD T+ D SR + L+ +L L + ++++
Sbjct: 378 DTFKLIAEGDLTSDIDISRRDE------------AGQLLCQLATMQATLKAMLDQIQEAS 425
Query: 445 KGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIK 504
+ ++ +Q+ VA + Q +Q + E + +EV A ET +++
Sbjct: 426 RQMDQRCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVAGHAGETASAAQ--- 482
Query: 505 ENSETGVEKVENAISRMQSITNVIDEL----GKSIKMLGEDGKKINEVTGLIKDIAEQTG 560
NSE VE+ I R ++TN + E ++ L +I ++T +IK+IA+QT
Sbjct: 483 -NSERLVEESNTQIGRSMAVTNRVVEAVTGSSATLHELNTAIDQIGQITQVIKEIADQTN 541
Query: 561 LLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGL 620
LLALNA+IEAARAG+AG+GFAVVA E++ LAE S DI I + + ++
Sbjct: 542 LLALNAAIEAARAGEAGRGFAVVADEVRKLAERTTTSTADITGNIGAIQGATHEAVNRME 601
Query: 621 KGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAA 680
+ EV++G+ + E L I + + + I +Q S ++ + + I+
Sbjct: 602 QAVREVEEGIGMMRESVAGLEGITAASQQVSAMARQISEASQQQSIASQEVNGSMEHISV 661
Query: 681 LSEEFTATAEEVTASTEELNSIIEEIRGI 709
L E+ TATA+E +TE L S E++R I
Sbjct: 662 LIEQNTATAQEAQRATEALVSTAEDLRAI 690
Score = 37.0 bits (84), Expect = 3e-06
Identities = 60/315 (19%), Positives = 126/315 (40%), Gaps = 38/315 (12%)
Query: 440 VEDELKGAEETATQVAEAATQVAEAASDQSAKLQ-ESSEELENTYEGAKEVYSAAEETVK 498
++++ + E T V E + E S LQ + EL ++ EV+ E+T+
Sbjct: 187 LQEQYQRKLEPTTVVNEVLALLGENRSQIMLALQHDPKSELAKLHDHGLEVH--LEKTLA 244
Query: 499 SSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDG---------------- 542
+ ++I E ++K+ + Q ++++LG++ K +G
Sbjct: 245 NRQQINAQLEA-LQKLPLSEKERQ----LVEQLGEARKKFSAEGVNAARDALKAGDFHQA 299
Query: 543 -----KKINEVTGLI----KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEE 593
KIN + G + K + ++ A A E A+A +A+ + + +LA
Sbjct: 300 SVLLLTKINPIYGQVQQAGKALVDELKASA-RADFERAQARYENILWAMALATLAALALA 358
Query: 594 IKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVK 653
+ + + + + ID T L +G D + DE L ++
Sbjct: 359 VVGGWLLVRAIVNPMRQAID-TFKLIAEGDLTSDIDISRRDEAGQLLCQLATMQATLKAM 417
Query: 654 INGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEV 713
++ I+ ++ + +AA S++ + + A+TEE + ++E+ G A E
Sbjct: 418 LDQIQEASRQMDQRCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVAGHAGET 477
Query: 714 TQVA---ERVTKKSS 725
A ER+ ++S+
Sbjct: 478 ASAAQNSERLVEESN 492
Score = 35.8 bits (81), Expect = 8e-06
Identities = 69/389 (17%), Positives = 156/389 (40%), Gaps = 27/389 (6%)
Query: 340 TTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVA---KGDFT 396
T V TG L L + + E + ++ + LA L N S +M + K +
Sbjct: 169 TAVVTGIGLSGLQEGNASLQEQYQRKLEPTTVVNEVLALLGENRSQIMLALQHDPKSELA 228
Query: 397 ARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAE 456
D E + LEK + A L E +++ L + Q VE + ++ + +
Sbjct: 229 KLHDHGLEVH-LEKTLANRQQINAQL--EALQKLPLSEKERQLVEQLGEARKKFSAEGVN 285
Query: 457 AATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVEN 516
AA +A A + ++ + Y ++ A + +K+S + + E + EN
Sbjct: 286 AARDALKAGDFHQASVLLLTK-INPIYGQVQQAGKALVDELKASA--RADFERAQARYEN 342
Query: 517 AISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLA---LNASIEAARA 573
+ M T ++ ++G + + ++ + L+A L + I+ +R
Sbjct: 343 ILWAMALATLA----ALALAVVG-GWLLVRAIVNPMRQAIDTFKLIAEGDLTSDIDISRR 397
Query: 574 GDAGK---GFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGV 630
+AG+ A + + +K++ ++I+++ ++ + + + D+V
Sbjct: 398 DEAGQLLCQLATMQATLKAMLDQIQEASRQMDQRCSQLESEVALVAAKSQQQLDDVQSIA 457
Query: 631 IAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAE 690
A +E + ++ ++ E+A AQN+ E + A++
Sbjct: 458 AATEEFSQSVQEVAGHAGETA-------SAAQNSERLVEESNTQIGRSMAVTNRVVEAVT 510
Query: 691 EVTASTEELNSIIEEIRGIAEEVTQVAER 719
+A+ ELN+ I++I I + + ++A++
Sbjct: 511 GSSATLHELNTAIDQIGQITQVIKEIADQ 539
Score = 34.3 bits (77), Expect = 2e-05
Identities = 45/239 (18%), Positives = 97/239 (40%), Gaps = 15/239 (6%)
Query: 493 AEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLI 552
AE + S +I E G + A + ++ ++D++ ++ + + + ++ L+
Sbjct: 384 AEGDLTSDIDISRRDEAGQLLCQLA-TMQATLKAMLDQIQEASRQMDQRCSQLESEVALV 442
Query: 553 KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIE---GVN 609
++Q + + + + A A E S A+ ++ VE+ N I V
Sbjct: 443 AAKSQQQLDDVQSIAAATEEFSQSVQEVAGHAGETASAAQNSERLVEESNTQIGRSMAVT 502
Query: 610 KRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTE 669
R+ + + E++ AID++ IKE +++ + A A E
Sbjct: 503 NRVVEAVTGSSATLHELNT---AIDQIGQITQVIKEIADQTNLLALNAAIEAARAGEAGR 559
Query: 670 GALKNAQEIAALSEEFTATAEEVT--------ASTEELNSIIEEIRGIAEEVTQVAERV 720
G A E+ L+E T + ++T A+ E +N + + +R + E + + E V
Sbjct: 560 GFAVVADEVRKLAERTTTSTADITGNIGAIQGATHEAVNRMEQAVREVEEGIGMMRESV 618