Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis JJ

 Score =  236 bits (603), Expect = 2e-66
 Identities = 162/565 (28%), Positives = 283/565 (50%), Gaps = 75/565 (13%)

Query: 6   KKIGTKLLIFMILCAIIPLMVVGGVSTNKITEEMQIQGDNSVNDNLNIFQESIENVIVEF 65
           K++GTKL+I+ I+ A+IP++++G VST+ I  EM  Q    +ND+LN  +  +   + + 
Sbjct: 8   KRLGTKLIIYSIITALIPIVMLGAVSTDTINTEMTKQAQEKINDDLNTAESVVNLKLDKI 67

Query: 66  ETTTSYTASLDTFSELLVNDDKEVLYDFAEKMKKSSEVDLVAFTDKNGNIISSSDNVQT- 124
            +   Y  S +    +L N+D + L   A   K +S  D V F D  GN+++ S++  T 
Sbjct: 68  SSLNKYIISNEKTINILKNNDTKELKTLAISYKNTSAPDFVVFFDGQGNVVARSNSDVTG 127

Query: 125 --NLKPVISKLLSNEVQSSFEIISGSEASKYS-----------------DYKVNNINDAL 165
             + + +  K++++   +S E++   ++ KY                  DY  +  + A+
Sbjct: 128 DNSYEDLFKKVVNSTGYTSIEVLD-KDSIKYENVGELVNIDIKGTDDSIDYSDSVQDSAM 186

Query: 166 AICVVAPVYH-SGELVGTVTLVDIVNNDDYWVDSLKERTGNEATIFLKNVRISTTVQTNG 224
           A+  + P+Y  +G+L+G     DI+N D   VD++K+ + +  TIFL  VR+ST VQ NG
Sbjct: 187 ALVSIEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDASKDATTIFLDGVRVSTNVQDNG 246

Query: 225 QDATGTKCSDEVYN-IITNHQDYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIPKAP 283
             A GT  S EVYN ++ + + Y G A V+   Y+T Y PI D D  ++G++F G P++ 
Sbjct: 247 GRAIGTLVSKEVYNHVVLDGKTYYGRAFVVNEWYLTAYEPIYDSDNEIIGMLFVGTPESK 306

Query: 284 FVAVITDTRNEIIIISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVK 343
           F+A+  + RN+  ++ L+GLL++++++    R I KP+E+LK+G E   NG YD K  V 
Sbjct: 307 FLALQANVRNQTFVVGLIGLLIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKVIVD 366

Query: 344 TGDELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESR 403
           + DE  EL+ +FNKMA  +                   N+SD   +    +     +E +
Sbjct: 367 SDDEFGELAKAFNKMATQI-------------------NISDEKLKKHAEELKTSYNELK 407

Query: 404 ENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAE 463
           E + L+  +   VS+      ELR  +  +   ++ V   L G   T     +   QVA+
Sbjct: 408 ELDKLKSELIAIVSH------ELRTPLTSIKGYVELV---LDGTMGTINDSQKKCLQVAD 458

Query: 464 AASDQSAKLQESSEELENTYEGAKEVYS-------------------AAEETVKSSEEIK 504
               +  +L ES  +L     G  E+Y                    A E+ +K ++E++
Sbjct: 459 DNIVRLRRLIESMLDLSKIERGELEMYREKVNLRAIVCDVIEYLKPLATEKNIKLNKEVE 518

Query: 505 ENSETGVEKVENAISRMQSITNVID 529
              +  +E  ++ I+  Q +TN+I+
Sbjct: 519 ---DIAIEADKDRIT--QVLTNLIE 538



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 28/196 (14%)

Query: 497 VKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIA 556
           +K  E++K+    G E V N     + I +  DE G+  K   +   +IN     +K  A
Sbjct: 341 IKPLEQLKQ----GAEWVSNGRYDQKVIVDSDDEFGELAKAFNKMATQINISDEKLKKHA 396

Query: 557 EQTGLLALNASIEAARAGDAGKG--FAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDD 614
           E+     L  S    +  D  K    A+V+ E+++    IK  VE +   ++G    I+D
Sbjct: 397 EE-----LKTSYNELKELDKLKSELIAIVSHELRTPLTSIKGYVELV---LDGTMGTIND 448

Query: 615 TIDLGLKGKDEVDKGVIAIDEVNDALLKI-----------KESVNESAVKINGIKHGAQN 663
           +    L+  D+    ++ +  + +++L +           +E VN  A+  + I++    
Sbjct: 449 SQKKCLQVADD---NIVRLRRLIESMLDLSKIERGELEMYREKVNLRAIVCDVIEYLKPL 505

Query: 664 ASENTEGALKNAQEIA 679
           A+E      K  ++IA
Sbjct: 506 ATEKNIKLNKEVEDIA 521



 Score = 25.4 bits (54), Expect = 0.009
 Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 18/172 (10%)

Query: 574 GDAGKGFAVVASEIKSLAEEIKKSVEDINHT------IEGVNKRIDDTIDLGLKGKDEVD 627
           G+  K F  +A++I    E++KK  E++  +      ++ +   +   +   L+      
Sbjct: 372 GELAKAFNKMATQINISDEKLKKHAEELKTSYNELKELDKLKSELIAIVSHELRTPLTSI 431

Query: 628 KGVI------AIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAAL 681
           KG +       +  +ND+  K  +  +++ V++  +     + S+   G L+  +E   L
Sbjct: 432 KGYVELVLDGTMGTINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNL 491

Query: 682 SEEFTATAEEV----TASTEELNSIIEEIRGIAEE--VTQVAERVTKKSSQF 727
                   E +    T    +LN  +E+I   A++  +TQV   + + + +F
Sbjct: 492 RAIVCDVIEYLKPLATEKNIKLNKEVEDIAIEADKDRITQVLTNLIENAIKF 543